Literature DB >> 27820600

Direct reprogramming of fibroblasts into renal tubular epithelial cells by defined transcription factors.

Michael M Kaminski1, Jelena Tosic1,2,3,4, Catena Kresbach1, Hannes Engel1, Jonas Klockenbusch1, Anna-Lena Müller1, Roman Pichler1, Florian Grahammer1, Oliver Kretz1,5, Tobias B Huber1,6, Gerd Walz1,6, Sebastian J Arnold1,2,6, Soeren S Lienkamp1,6.   

Abstract

Direct reprogramming by forced expression of transcription factors can convert one cell type into another. Thus, desired cell types can be generated bypassing pluripotency. However, direct reprogramming towards renal cells remains an unmet challenge. Here, we identify renal cell fate-inducing factors on the basis of their tissue specificity and evolutionarily conserved expression, and demonstrate that combined expression of Emx2, Hnf1b, Hnf4a and Pax8 converts mouse and human fibroblasts into induced renal tubular epithelial cells (iRECs). iRECs exhibit epithelial features, a global gene expression profile resembling their native counterparts, functional properties of differentiated renal tubule cells and sensitivity to nephrotoxic substances. Furthermore, iRECs integrate into kidney organoids and form tubules in decellularized kidneys. Our approach demonstrates that reprogramming factors can be identified by targeted in silico analysis. Renal tubular epithelial cells generated ex vivo by forced expression of transcription factors may facilitate disease modelling, drug and nephrotoxicity testing, and regenerative approaches.

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Year:  2016        PMID: 27820600     DOI: 10.1038/ncb3437

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  54 in total

1.  Directing human embryonic stem cell differentiation towards a renal lineage generates a self-organizing kidney.

Authors:  M Takasato; P X Er; M Becroft; J M Vanslambrouck; E G Stanley; A G Elefanty; M H Little
Journal:  Nat Cell Biol       Date:  2013-12-15       Impact factor: 28.824

2.  Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Authors:  Moran N Cabili; Cole Trapnell; Loyal Goff; Magdalena Koziol; Barbara Tazon-Vega; Aviv Regev; John L Rinn
Journal:  Genes Dev       Date:  2011-09-02       Impact factor: 11.361

3.  Association between tubular toxicity of cisplatin and expression of organic cation transporter rOCT2 (Slc22a2) in the rat.

Authors:  Atsushi Yonezawa; Satohiro Masuda; Kumiko Nishihara; Ikuko Yano; Toshiya Katsura; Ken-ichi Inui
Journal:  Biochem Pharmacol       Date:  2005-10-20       Impact factor: 5.858

4.  A map of the cis-regulatory sequences in the mouse genome.

Authors:  Yin Shen; Feng Yue; David F McCleary; Zhen Ye; Lee Edsall; Samantha Kuan; Ulrich Wagner; Jesse Dixon; Leonard Lee; Victor V Lobanenkov; Bing Ren
Journal:  Nature       Date:  2012-08-02       Impact factor: 49.962

5.  Kidney injury molecule-1 outperforms traditional biomarkers of kidney injury in preclinical biomarker qualification studies.

Authors:  Vishal S Vaidya; Josef S Ozer; Frank Dieterle; Fitz B Collings; Victoria Ramirez; Sean Troth; Nagaraja Muniappa; Douglas Thudium; David Gerhold; Daniel J Holder; Norma A Bobadilla; Estelle Marrer; Elias Perentes; André Cordier; Jacky Vonderscher; Gérard Maurer; Peter L Goering; Frank D Sistare; Joseph V Bonventre
Journal:  Nat Biotechnol       Date:  2010-05       Impact factor: 54.908

6.  Direct reprogramming of fibroblasts into embryonic Sertoli-like cells by defined factors.

Authors:  Yosef Buganim; Elena Itskovich; Yueh-Chiang Hu; Albert W Cheng; Kibibi Ganz; Sovan Sarkar; Dongdong Fu; G Grant Welstead; David C Page; Rudolf Jaenisch
Journal:  Cell Stem Cell       Date:  2012-09-07       Impact factor: 24.633

7.  A predictive computational framework for direct reprogramming between human cell types.

Authors:  Owen J L Rackham; Jaber Firas; Hai Fang; Matt E Oates; Melissa L Holmes; Anja S Knaupp; Harukazu Suzuki; Christian M Nefzger; Carsten O Daub; Jay W Shin; Enrico Petretto; Alistair R R Forrest; Yoshihide Hayashizaki; Jose M Polo; Julian Gough
Journal:  Nat Genet       Date:  2016-01-18       Impact factor: 38.330

8.  The GUDMAP database--an online resource for genitourinary research.

Authors:  Simon D Harding; Chris Armit; Jane Armstrong; Jane Brennan; Ying Cheng; Bernard Haggarty; Derek Houghton; Sue Lloyd-MacGilp; Xingjun Pi; Yogmatee Roochun; Mehran Sharghi; Christopher Tindal; Andrew P McMahon; Brian Gottesman; Melissa H Little; Kylie Georgas; Bruce J Aronow; S Steven Potter; Eric W Brunskill; E Michelle Southard-Smith; Cathy Mendelsohn; Richard A Baldock; Jamie A Davies; Duncan Davidson
Journal:  Development       Date:  2011-07       Impact factor: 6.868

9.  CellNet: network biology applied to stem cell engineering.

Authors:  Patrick Cahan; Hu Li; Samantha A Morris; Edroaldo Lummertz da Rocha; George Q Daley; James J Collins
Journal:  Cell       Date:  2014-08-14       Impact factor: 41.582

10.  Gene-pair expression signatures reveal lineage control.

Authors:  Merja Heinäniemi; Matti Nykter; Roger Kramer; Anke Wienecke-Baldacchino; Lasse Sinkkonen; Joseph Xu Zhou; Richard Kreisberg; Stuart A Kauffman; Sui Huang; Ilya Shmulevich
Journal:  Nat Methods       Date:  2013-04-21       Impact factor: 28.547

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  48 in total

1.  Generation of inner ear hair cells by direct lineage conversion of primary somatic cells.

Authors:  Louise Menendez; Talon Trecek; Suhasni Gopalakrishnan; Litao Tao; Alexander L Markowitz; Haoze V Yu; Xizi Wang; Juan Llamas; Chichou Huang; James Lee; Radha Kalluri; Justin Ichida; Neil Segil
Journal:  Elife       Date:  2020-06-30       Impact factor: 8.140

Review 2.  Advances in predictive in vitro models of drug-induced nephrotoxicity.

Authors:  Joanne Y-C Soo; Jitske Jansen; Rosalinde Masereeuw; Melissa H Little
Journal:  Nat Rev Nephrol       Date:  2018-06       Impact factor: 28.314

3.  Recapitulating kidney development in vitro by priming and differentiating mouse embryonic stem cells in monolayers.

Authors:  Theresa Chow; Frances T M Wong; Claudio Monetti; Andras Nagy; Brian Cox; Ian M Rogers
Journal:  NPJ Regen Med       Date:  2020-04-20

4.  Developmental biology: Transcriptional reprogramming of kidney tubules.

Authors:  Susan J Allison
Journal:  Nat Rev Nephrol       Date:  2016-11-14       Impact factor: 28.314

Review 5.  Renal lineage cells as a source for renal regeneration.

Authors:  Oren Pleniceanu; Dorit Omer; Orit Harari-Steinberg; Benjamin Dekel
Journal:  Pediatr Res       Date:  2017-11-15       Impact factor: 3.756

6.  Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.

Authors:  Christina James-Zorn; Virgilio Ponferrada; Malcolm E Fisher; Kevin Burns; Joshua Fortriede; Erik Segerdell; Kamran Karimi; Vaneet Lotay; Dong Zhuo Wang; Stanley Chu; Troy Pells; Ying Wang; Peter D Vize; Aaron Zorn
Journal:  Methods Mol Biol       Date:  2018

7.  New Trends in Regenerative Medicine: Reprogramming and Reconditioning.

Authors:  Michael S Goligorsky
Journal:  J Am Soc Nephrol       Date:  2019-09-20       Impact factor: 10.121

Review 8.  Naturally-Derived Biomaterials for Tissue Engineering Applications.

Authors:  Matthew Brovold; Joana I Almeida; Iris Pla-Palacín; Pilar Sainz-Arnal; Natalia Sánchez-Romero; Jesus J Rivas; Helen Almeida; Pablo Royo Dachary; Trinidad Serrano-Aulló; Shay Soker; Pedro M Baptista
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

9.  Successful Introduction of Human Renovascular Units into the Mammalian Kidney.

Authors:  Oren Pleniceanu; Orit Harari-Steinberg; Dorit Omer; Yehudit Gnatek; Bat-El Lachmi; Osnat Cohen-Zontag; Eugenia Manevitz-Mendelson; Aviv Barzilai; Matan Yampolsky; Yaron Fuchs; Barak Rosenzweig; Alon Eisner; Zohar Dotan; Leon G Fine; Benjamin Dekel; Shoshana Greenberger
Journal:  J Am Soc Nephrol       Date:  2020-08-04       Impact factor: 10.121

10.  Hnf4a Is Required for the Development of Cdh6-Expressing Progenitors into Proximal Tubules in the Mouse Kidney.

Authors:  Sierra S Marable; Eunah Chung; Joo-Seop Park
Journal:  J Am Soc Nephrol       Date:  2020-08-06       Impact factor: 10.121

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