Literature DB >> 27818565

Multi-scale learning based segmentation of glands in digital colonrectal pathology images.

Yi Gao1, William Liu2, Shipra Arjun3, Liangjia Zhu4, Vadim Ratner4, Tahsin Kurc5, Joel Saltz5, Allen Tannenbaum6.   

Abstract

Digital histopathological images provide detailed spatial information of the tissue at micrometer resolution. Among the available contents in the pathology images, meso-scale information, such as the gland morphology, texture, and distribution, are useful diagnostic features. In this work, focusing on the colon-rectal cancer tissue samples, we propose a multi-scale learning based segmentation scheme for the glands in the colon-rectal digital pathology slides. The algorithm learns the gland and non-gland textures from a set of training images in various scales through a sparse dictionary representation. After the learning step, the dictionaries are used collectively to perform the classification and segmentation for the new image.

Entities:  

Keywords:  dictionary learning; digital pathology; gland segmentation; texture

Year:  2016        PMID: 27818565      PMCID: PMC5091801          DOI: 10.1117/12.2216790

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  9 in total

1.  Automatic segmentation of colon glands using object-graphs.

Authors:  Cigdem Gunduz-Demir; Melih Kandemir; Akif Burak Tosun; Cenk Sokmensuer
Journal:  Med Image Anal       Date:  2009-09-19       Impact factor: 8.545

2.  Computerized image-based detection and grading of lymphocytic infiltration in HER2+ breast cancer histopathology.

Authors:  Ajay Nagesh Basavanhally; Shridar Ganesan; Shannon Agner; James Peter Monaco; Michael D Feldman; John E Tomaszewski; Gyan Bhanot; Anant Madabhushi
Journal:  IEEE Trans Biomed Eng       Date:  2009-10-30       Impact factor: 4.538

3.  Memory based active contour algorithm using pixel-level classified images for colon crypt segmentation.

Authors:  Assaf Cohen; Ehud Rivlin; Ilan Shimshoni; Edmond Sabo
Journal:  Comput Med Imaging Graph       Date:  2015-01-08       Impact factor: 4.790

Review 4.  Histopathological image analysis: a review.

Authors:  Metin N Gurcan; Laura E Boucheron; Ali Can; Anant Madabhushi; Nasir M Rajpoot; B Yener
Journal:  IEEE Rev Biomed Eng       Date:  2009-10-30

5.  A novel polar space random field model for the detection of glandular structures.

Authors:  Hao Fu; Guoping Qiu; Jie Shu; Mohammad Ilyas
Journal:  IEEE Trans Med Imaging       Date:  2014-03       Impact factor: 10.048

6.  Partitioning histopathological images: an integrated framework for supervised color-texture segmentation and cell splitting.

Authors:  Hui Kong; Metin Gurcan; Kamel Belkacem-Boussaid
Journal:  IEEE Trans Med Imaging       Date:  2011-04-11       Impact factor: 10.048

7.  Sparse texture active contour.

Authors:  Yi Gao; Sylvain Bouix; Martha Shenton; Allen Tannenbaum
Journal:  IEEE Trans Image Process       Date:  2013-06-21       Impact factor: 10.856

8.  The proneural molecular signature is enriched in oligodendrogliomas and predicts improved survival among diffuse gliomas.

Authors:  Lee A D Cooper; David A Gutman; Qi Long; Brent A Johnson; Sharath R Cholleti; Tahsin Kurc; Joel H Saltz; Daniel J Brat; Carlos S Moreno
Journal:  PLoS One       Date:  2010-09-03       Impact factor: 3.240

9.  Machine-based morphologic analysis of glioblastoma using whole-slide pathology images uncovers clinically relevant molecular correlates.

Authors:  Jun Kong; Lee A D Cooper; Fusheng Wang; Jingjing Gao; George Teodoro; Lisa Scarpace; Tom Mikkelsen; Matthew J Schniederjan; Carlos S Moreno; Joel H Saltz; Daniel J Brat
Journal:  PLoS One       Date:  2013-11-13       Impact factor: 3.240

  9 in total
  3 in total

1.  Dual-stream Multiple Instance Learning Network for Whole Slide Image Classification with Self-supervised Contrastive Learning.

Authors:  Bin Li; Yin Li; Kevin W Eliceiri
Journal:  Conf Comput Vis Pattern Recognit Workshops       Date:  2021-11-13

2.  Subtype classification of malignant lymphoma using immunohistochemical staining pattern.

Authors:  Noriaki Hashimoto; Kaho Ko; Tatsuya Yokota; Kei Kohno; Masato Nakaguro; Shigeo Nakamura; Ichiro Takeuchi; Hidekata Hontani
Journal:  Int J Comput Assist Radiol Surg       Date:  2022-02-11       Impact factor: 3.421

3.  Nuclear shape, architecture and orientation features from H&E images are able to predict recurrence in node-negative gastric adenocarcinoma.

Authors:  Meng-Yao Ji; Lei Yuan; Xiao-Da Jiang; Zhi Zeng; Na Zhan; Ping-Xiao Huang; Cheng Lu; Wei-Guo Dong
Journal:  J Transl Med       Date:  2019-03-18       Impact factor: 5.531

  3 in total

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