Literature DB >> 27817027

Approximate analytic solution of a simple system of kinetic equations describing the enzymatic synthesis of nucleic acids.

A A Fedorov1, A S Berdnikov2, D G Sochivko3, D A Varlamov4, V E Kurochkin2, R V Petrov5.   

Abstract

Macroscopic kinetic models describing the process of polymerase chain reaction (PCR) are currently solved only by numerical methods, which hampers the development of effective software algorithms for processing the results of the reaction. This paper considers the application of the homotopy perturbation method for obtaining approximate analytical solution of the simplest system of enzymatic kinetic equations describing the synthesis of nucleic acid molecules during PCR. The resulting approximate analytic solution with high accuracy reproduces the results of a numerical solution of the system in a wide range of ratios of enzyme and substrate concentrations both for the case of a large excess of the substrate over the enzyme and vice versa.

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Year:  2016        PMID: 27817027     DOI: 10.1134/S1607672916050185

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN: 1607-6729            Impact factor:   0.788


  4 in total

1.  Mathematical model of real-time PCR kinetics.

Authors:  Jana L Gevertz; Stanley M Dunn; Charles M Roth
Journal:  Biotechnol Bioeng       Date:  2005-11-05       Impact factor: 4.530

2.  A kinetic model of quantitative real-time polymerase chain reaction.

Authors:  Sarika Mehra; Wei-Shou Hu
Journal:  Biotechnol Bioeng       Date:  2005-09-30       Impact factor: 4.530

3.  Stepwise kinetic equilibrium models of quantitative polymerase chain reaction.

Authors:  Gary Cobbs
Journal:  BMC Bioinformatics       Date:  2012-08-16       Impact factor: 3.169

4.  Absolute estimation of initial concentrations of amplicon in a real-time RT-PCR process.

Authors:  Marjo V Smith; Chris R Miller; Michael Kohn; Nigel J Walker; Chris J Portier
Journal:  BMC Bioinformatics       Date:  2007-10-23       Impact factor: 3.169

  4 in total
  1 in total

1.  Alternative solution of the simplest model of enzymatic synthesis of nucleic acids by homotopy perturbation method.

Authors:  A A Fedorov; A S Berdnikov; D G Sochivko; D A Varlamov; V E Kurochkin; R V Petrov
Journal:  Dokl Biochem Biophys       Date:  2017-01-06       Impact factor: 0.788

  1 in total

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