Literature DB >> 27816474

Characterization of complete mitochondrial genome of fives tripe wrasse (Thalassoma quinquevittatum, Lay & Bennett, 1839) and phylogenetic analysis.

Kecheng Zhu1, Na Wu1, Xiaoxiao Sun1, Huayang Guo1, Nan Zhang1, Shigui Jiang2, Dianchang Zhang3.   

Abstract

To further supplement the genome-level features in related species, T. quinquevittatum complete mtDNA was firstly sequenced and de novo assembled by next-generation sequencing. The full-length mtDNA of T. quinquevittatum was a 16,896bp fragment, which was atypical of Labridae, with 2 ribosomal RNA (rRNA) genes, 13 protein-coding genes (PCGs), 23 transfer RNA (tRNA) genes, and a major non-coding control region (D-loop region). Additionally, the mtDNA of T. quinquevittatum exhibited characteristics of A (27.1%), T (29.3%), G (17.8%), and C (25.8%) with a high A+T content (56.4%). Furthermore, the analysis of the average Ka/Ks in the 13 PCGs of three Labridae species indicated a strong purifying selection within this group. Additionally, the phylogenetic analysis based on 13 concatenated PCGs nucleotide and amino acid datasets, showed high value support for the following sister clade among the four genera (T. quinquevittatum, Halichoeres trimaculatus, Halichoeres melanurus, Parajulis poecilepterus). The complete mtDNA of the T. quinquevittatum provided important information for the study in population genetics and evolutionary theory. Copyright Â
© 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Ka/Ks; Mitochondrial DNA; Phylogenetic analysis; Thalassoma quinquevittatum

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Year:  2016        PMID: 27816474     DOI: 10.1016/j.gene.2016.10.042

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  3 in total

1.  Sequencing and characterization of the complete mitochondrial genome of Japanese Swellshark (Cephalloscyllium umbratile).

Authors:  Ke-Cheng Zhu; Yin-Yin Liang; Na Wu; Hua-Yang Guo; Nan Zhang; Shi-Gui Jiang; Dian-Chang Zhang
Journal:  Sci Rep       Date:  2017-11-10       Impact factor: 4.379

2.  Characterization of the complete mitochondrial genome sequence of orangeline wrasse Halichoeres hartzfeldii (Bleeker, 1852) with the phylogenetic relationships within the Labridae species.

Authors:  Hua-Yang Guo; Nan Zhang; Ke-Cheng Zhu; Bao-Suo Liu; Liang Guo; Jing-Wen Yang; Dian-Chang Zhang
Journal:  Mitochondrial DNA B Resour       Date:  2019-09-26       Impact factor: 0.658

3.  The complete mitochondrial genome of false trevally Lactarius Lactarius (Bloch and Schneider, 1801).

Authors:  Min Yang; Pengfei Li; Qiwei Qin; Kecheng Zhu
Journal:  Mitochondrial DNA B Resour       Date:  2019-12-11       Impact factor: 0.658

  3 in total

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