Literature DB >> 27812941

Get GO! Retrieving GO Data Using AmiGO, QuickGO, API, Files, and Tools.

Monica Munoz-Torres1, Seth Carbon2.   

Abstract

The Gene Ontology Consortium (GOC) produces a wealth of resources widely used throughout the scientific community. In this chapter, we discuss the different ways in which researchers can access the resources of the GOC. We here share details about the mechanics of obtaining GO annotations, both by manually browsing, querying, and downloading data from the GO website, as well as computationally accessing the resources from the command line, including the ability to restrict the data being retrieved to subsets with only certain attributes.

Entities:  

Keywords:  Access; AmiGO; Annotation; Annotation resources; Biocuration; Bioinformatics; Curation; Gene ontology; Genomics; Ontology; QuickGO; Transcriptomics

Mesh：

Year:  2017        PMID： 27812941     DOI： 10.1007/978-1-4939-3743-1_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  9 in total

1.  GrainGenes: a data-rich repository for small grains genetics and genomics.

Authors:  Eric Yao; Victoria C Blake; Laurel Cooper; Charlene P Wight; Steve Michel; H Busra Cagirici; Gerard R Lazo; Clay L Birkett; David J Waring; Jean-Luc Jannink; Ian Holmes; Amanda J Waters; David P Eickholt; Taner Z Sen
Journal:  Database (Oxford)       Date:  2022-05-25       Impact factor: 4.462

2.  PON-All: Amino Acid Substitution Tolerance Predictor for All Organisms.

Authors:  Yang Yang; Aibin Shao; Mauno Vihinen
Journal:  Front Mol Biosci       Date:  2022-06-16

3.  New Roles for the Heterochronic Transcription Factor LIN-29 in Cuticle Maintenance and Lipid Metabolism at the Larval-to-Adult Transition in Caenorhabditis elegans.

Authors:  Patricia Abete-Luzi; Tetsunari Fukushige; Sijung Yun; Michael W Krause; David M Eisenmann
Journal:  Genetics       Date:  2020-01-23       Impact factor: 4.562

4.  eDGAR: a database of Disease-Gene Associations with annotated Relationships among genes.

Authors:  Giulia Babbi; Pier Luigi Martelli; Giuseppe Profiti; Samuele Bovo; Castrense Savojardo; Rita Casadio
Journal:  BMC Genomics       Date:  2017-08-11       Impact factor: 3.969

5.  Bioinformatic gene analysis for potential biomarkers and therapeutic targets of atrial fibrillation-related stroke.

Authors:  Rongjun Zou; Dingwen Zhang; Lei Lv; Wanting Shi; Zijiao Song; Bin Yi; Bingjia Lai; Qian Chen; Songran Yang; Ping Hua
Journal:  J Transl Med       Date:  2019-02-13       Impact factor: 5.531

6.  Advances in gene ontology utilization improve statistical power of annotation enrichment.

Authors:  Eugene W Hinderer; Robert M Flight; Rashmi Dubey; James N MacLeod; Hunter N B Moseley
Journal:  PLoS One       Date:  2019-08-15       Impact factor: 3.240

7.  Bioinformatics analysis to identify potential biomarkers and therapeutic targets for ST-segment-elevation myocardial infarction-related ischemic stroke.

Authors:  Shuo Feng; Rui Li; Qingqing Zhou; Fengling Qu; Wei Hu; Xinfeng Liu
Journal:  Front Neurol       Date:  2022-08-11       Impact factor: 4.086

8.  Integrated Analysis of Distant Metastasis-Associated Genes and Potential Drugs in Colon Adenocarcinoma.

Authors:  Miaowei Wu; Weiyang Lou; Meng Lou; Peifen Fu; Xiao-Fang Yu
Journal:  Front Oncol       Date:  2020-10-23       Impact factor: 6.244

9.  Gene Ontology curation of the blood-brain barrier to improve the analysis of Alzheimer's and other neurological diseases.

Authors:  Shirin C C Saverimuttu; Barbara Kramarz; Milagros Rodríguez-López; Penelope Garmiri; Helen Attrill; Katherine E Thurlow; Marios Makris; Sandra de Miranda Pinheiro; Sandra Orchard; Ruth C Lovering
Journal:  Database (Oxford)       Date:  2021-10-26       Impact factor: 3.451
  9 in total

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