| Literature DB >> 27812101 |
Sören L Becker1,2,3, Peiling Yap1,2, Ninon S Horié4, Emilie Alirol5, Barbara Barbé6, Nisha K Bhatta7, Narayan R Bhattarai8, Emmanuel Bottieau6, Justin K Chatigre9, Jean T Coulibaly1,2,10,11, Hassan K M Fofana12, Jan Jacobs6,13, Prahlad Karki14, Basudha Khanal8, Stefanie Knopp1,2,15, Kanika Koirala14, Yodi Mahendradhata16, Pascal Mertens17, Fransiska Meyanti16, Elsa H Murhandarwati16, Eliézer K N'Goran10,11, Rosanna W Peeling18, Bickram Pradhan14, Raffaella Ravinetto6,19, Suman Rijal14, Moussa Sacko12, Rénion Saye12, Pierre H H Schneeberger1,2,20,21, Céline Schurmans6, Kigbafori D Silué10,11, Peter Steinmann1,2, Harry van Loen6, Kristien Verdonck22, Lisette van Lieshout23, Lutz von Müller3, Joel A Yao10,11, Marleen Boelaert22, François Chappuis4, Katja Polman24, Jürg Utzinger1,2.
Abstract
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Year: 2016 PMID: 27812101 PMCID: PMC5094778 DOI: 10.1371/journal.pntd.0004818
Source DB: PubMed Journal: PLoS Negl Trop Dis ISSN: 1935-2727
Set of standard operating procedures (SOPs) used in the NIDIAG study on persistent digestive disorders.
| Number | Type | Purpose of SOP | End user | Syndrome |
|---|---|---|---|---|
| 1 | Clinical | History taking | Site investigator | Digestive |
| 2 | Clinical | Clinical examination | Site investigator | Digestive |
| 3 | Clinical | Selection of controls without digestive syndrome | Site investigator | Digestive |
| 4 | Clinical | Specific treatment procedures (including dosage) | Site investigator | Digestive |
| 5 | Clinical | Assessing inclusion and exclusion criteria | Site investigator | Digestive |
| 6 | Clinical | Patient recruitment and patient flow | Site investigator | Digestive |
| 7 | Laboratory | Kinyoun staining technique | Laboratory technician | Digestive |
| 8 | Laboratory | Modified acid-fast staining technique | Laboratory technician | Digestive |
| 9 | Laboratory | Crypto/Giardia Duo-Strip rapid diagnostic test (RDT) | Laboratory technician | Digestive |
| 10 | Laboratory | Kato-Katz thick smear technique | Laboratory technician | Digestive |
| 11 | Laboratory | Baermann funnel concentration technique | Laboratory technician | Digestive |
| 12 | Laboratory | Mini-FLOTAC technique | Laboratory technician | Digestive |
| 13 | Laboratory | How to obtain a stool sample | Laboratory technician | Digestive |
| 14 | Laboratory | Formalin-ether concentration technique | Laboratory technician | Digestive |
| 15 | Laboratory | Koga agar plate culture | Laboratory technician | Digestive |
| 16 | Laboratory | Direct fecal smear technique | Laboratory technician | Digestive |
| 17 | Laboratory | Preparation of aliquots for molecular post-hoc testing | Laboratory technician | Digestive |
| 18 | Laboratory | Urine point-of-care circulating cathodic antigen (POC-CCA) RDT for the diagnosis of | Laboratory technician | Digestive |
| 19 | Laboratory | Diagnostic sample flow | Laboratory technician | Digestive |
| 20 | Laboratory | Urine sampling | Laboratory technician | Digestive |
| 21 | Quality | Obtaining informed consent | Site investigator | Common |
| 22 | Quality | Numbering system to be used in NIDIAG studies | Laboratory technician | Digestive mainly |
| 23 | Quality | Management of study documents | Principal investigator (PI)/site investigator/ nurse/laboratory technician | Common |
| 24 | Quality | SOP on SOPs | SOP author | Common |
| 25 | Quality | External monitoring | PI/site investigator | Common |
| 26 | Quality | Internal quality control activities | Quality manager | Common |
| 27 | Quality | Good clinical laboratory practice (GCLP) supervision visits | Quality manager | Common |
| 28 | Quality | Min/max thermometer | Laboratory technician | Common |
| 29 | Quality | Stock management | Laboratory technician | Common |
| 30 | Quality | Handling of expired and disqualified products | Laboratory technician | Common |
| 31 | Quality | Handling and storage of rapid diagnostic tests | Laboratory technician | Digestive |
| 32 | Data | Completing case report forms (CRFs) | Site investigator | Common |
| 33 | Data | Procedure for data management | Data manager | Digestive |
Laboratory diagnostic techniques used and internally compared in the NIDIAG study on persistent digestive disorders.
| Diagnostic technique | Target pathogen(s) | |||
|---|---|---|---|---|
| Soil-transmitted helminths | Intestinal protozoa | |||
| Direct fecal smear | (✓) | (✓) | (✓) | (✓) |
| Kato-Katz thick smear | ✓ | ✓ | – | – |
| Formalin-ether concentration | ✓ | ✓ | (✓) | ✓ |
| Mini-FLOTAC | ✓ | ✓ | – | (✓) |
| Baermann funnel concentration | (✓) | – | ✓ | – |
| Koga agar plate culture | (✓) | – | ✓ | – |
| RDT for | – | – | – | ✓ |
| POC-CCA urine cassette test | – | ✓ | – | – |
| Acid-fast staining procedure | – | – | – | ✓ |
The laboratory diagnostic techniques consisted of microscopic methods and rapid diagnostic tests (RDTs). They were used and compared within the NIDIAG study on persistent digestive disorders, placing particular emphasis on the suitability for the detection of helminths and intestinal protozoa that may give rise to persistent digestive disorders (≥2 weeks). The following grading system was employed to characterize the suitability of a certain laboratory technique for the detection of specific pathogens: ✓ suitable; (✓) partially suitable; –not suitable.
Of note, additional bacteriologic stool cultures were performed in all countries except Indonesia in case of diarrheic stool samples.
aVery limited published data, according to which FLOTAC techniques may detect some intestinal protozoa species (e.g., G. intestinalis), but further validation of the technique for this use is required.
bHookworm larvae can be detected, in particular by culture. Additionally, hookworm larvae can be found using the Baermann technique, if the stool sample has been kept long enough for the eggs to hatch.
cThis RDT detects only Cryptosporidium spp. and G. intestinalis.
dAcid-fast staining methods (e.g., Kinyoun stain) are particularly suitable for the detection of Cryptosporidium spp., Cyclospora cayetanensis, and Cystoisospora belli that are easily missed by most other microscopic diagnostic techniques.
Fig 1Principal elements of the NIDIAG digestive study and the respective standard operating procedures (SOPs) used.
Fig 2Country-specific enrolment characteristics of patients and controls in the NIDIAG study on persistent digestive disorders.
Diagnostic challenges encountered during the NIDIAG study on persistent digestive disorders and proposed solutions.
| Diagnostic test | Problem | Possible reason | Solution |
|---|---|---|---|
| RDT for | Faintly positive test line that is hard to interpret as either a positive or negative test result | An inaccurate volume of stool sample may have been used | While an exact amount of liquid stool could easily be taken via pipettes, this was less standardized for solid samples. All positive or faintly positive RDT results were documented by photography, and results should be compared to subsequent microscopic and molecular diagnostics |
| RDT for | During internal quality control, a | False-negative results were exclusively observed on expired or nearly expired RDTs | Strict adherence to the indicated expiration dates of RDTs in clinical studies and routine diagnostics |
| Formalin-ether concentration | Difficult microscopic reading of stool samples following formalin-ether concentration | Questionable quality of the locally obtained ether | Identify alternative provider for ether and other chemical products required for analysis (proved to be difficult in some study countries) |
| Mini-FLOTAC | Leakage of one flotation chamber | The utilized Mini-FLOTAC apparatus can be reused after disinfection. However, the washing procedure may influence the stability of the flotation chambers | Apply vaseline on the septum or partition of the Mini-FLOTAC to prevent leakage |