Literature DB >> 27810875

Seasonal and geographical distribution of near-surface small photosynthetic eukaryotes in the western North Pacific determined by pyrosequencing of 18S rDNA.

Takafumi Kataoka1, Haruyo Yamaguchi2, Mayumi Sato2, Tsuyoshi Watanabe3, Yukiko Taniuchi3,4, Akira Kuwata3, Masanobu Kawachi2.   

Abstract

In this study, we investigated the distribution of small photosynthetic eukaryotes in the near-surface layer of the western North Pacific at four stations, including two oceanic stations where the subarctic Oyashio and subtropical Kuroshio currents influence a transition region and the bay mouth and head of the Sendai Bay, from April 2012 to May 2013. Flow cytometry was applied to sort small photosynthetic eukaryotes (<5 μm), and high-throughput sequencing of 18S rDNA was performed. Our taxonomic analysis showed that 19/195 operational taxonomic units (OTUs) were frequently distributed among all sites. Composition analysis showed that the OTUs had characteristic patterns and were divided into four main groups. Two groups reflected the low-saline water and winter season, with the characteristic OTUs belonging to diatoms; Chaetoceros and Leptocylindrus were characteristic of low saline water, and two diatom genera (Minidiscus and Minutocellus) and Cryptomonadales-related OTUs were prevalent in the winter. Our results indicate that the community composition of small photosynthetic eukaryotes seasonally changes in a dynamic manner according to variations in water properties. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  18S rDNA; Kuroshio–Oyashio transition; pyrosequencing; small eukaryotic phytoplankton; spatiotemporal distribution

Mesh:

Substances:

Year:  2016        PMID: 27810875     DOI: 10.1093/femsec/fiw229

Source DB:  PubMed          Journal:  FEMS Microbiol Ecol        ISSN: 0168-6496            Impact factor:   4.194


  10 in total

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Authors:  T A Belevich; L V Ilyash; I A Milyutina; M D Logacheva; D V Goryunov; A V Troitsky
Journal:  Microb Ecol       Date:  2017-09-24       Impact factor: 4.552

3.  Development of a time-series shotgun metagenomics database for monitoring microbial communities at the Pacific coast of Japan.

Authors:  Kazutoshi Yoshitake; Gaku Kimura; Tomoko Sakami; Tsuyoshi Watanabe; Yukiko Taniuchi; Shigeho Kakehi; Akira Kuwata; Haruyo Yamaguchi; Takafumi Kataoka; Masanobu Kawachi; Kazuho Ikeo; Engkong Tan; Yoji Igarashi; Masafumi Ohtsubo; Shugo Watabe; Yutaka Suzuki; Shuichi Asakawa; Sonoko Ishino; Kosuke Tashiro; Yoshizumi Ishino; Takanori Kobayashi; Katsuhiko Mineta; Takashi Gojobori
Journal:  Sci Rep       Date:  2021-06-09       Impact factor: 4.379

4.  Insight Into the Pico- and Nano-Phytoplankton Communities in the Deepest Biosphere, the Mariana Trench.

Authors:  Ruoyu Guo; Yantao Liang; Yu Xin; Long Wang; Shanli Mou; Chunjie Cao; Ruize Xie; Chuanlun Zhang; Jiwei Tian; Yongyu Zhang
Journal:  Front Microbiol       Date:  2018-09-26       Impact factor: 5.640

5.  A Preliminary Metagenome Analysis Based on a Combination of Protein Domains.

Authors:  Yoji Igarashi; Daisuke Mori; Susumu Mitsuyama; Kazutoshi Yoshitake; Hiroaki Ono; Tsuyoshi Watanabe; Yukiko Taniuchi; Tomoko Sakami; Akira Kuwata; Takanori Kobayashi; Yoshizumi Ishino; Shugo Watabe; Takashi Gojobori; Shuichi Asakawa
Journal:  Proteomes       Date:  2019-04-29

6.  Data on taxonomic annotation and diversity of 18S rRNA gene amplicon libraries derived from high throughput sequencing.

Authors:  Takafumi Kataoka; Ryuji Kondo
Journal:  Data Brief       Date:  2019-07-02

7.  Eukaryotic Phytoplankton Contributing to a Seasonal Bloom and Carbon Export Revealed by Tracking Sequence Variants in the Western North Pacific.

Authors:  Takuhei Shiozaki; Yuu Hirose; Koji Hamasaki; Ryo Kaneko; Kazuo Ishikawa; Naomi Harada
Journal:  Front Microbiol       Date:  2019-11-26       Impact factor: 5.640

8.  Metagenomic analysis provides functional insights into seasonal change of a non-cyanobacterial prokaryotic community in temperate coastal waters.

Authors:  Kaoru Matsumoto; Tomoko Sakami; Tsuyoshi Watanabe; Yukiko Taniuchi; Akira Kuwata; Shigeho Kakehi; Tan Engkong; Yoji Igarashi; Shigeharu Kinoshita; Shuichi Asakawa; Masahira Hattori; Shugo Watabe; Yoshizumi Ishino; Takanori Kobayashi; Takashi Gojobori; Kazuho Ikeo
Journal:  PLoS One       Date:  2021-10-12       Impact factor: 3.240

Review 9.  Metagenomics: The Next Culture-Independent Game Changer.

Authors:  Jessica D Forbes; Natalie C Knox; Jennifer Ronholm; Franco Pagotto; Aleisha Reimer
Journal:  Front Microbiol       Date:  2017-07-04       Impact factor: 5.640

Review 10.  Viruses of Eukaryotic Algae: Diversity, Methods for Detection, and Future Directions.

Authors:  Samantha R Coy; Eric R Gann; Helena L Pound; Steven M Short; Steven W Wilhelm
Journal:  Viruses       Date:  2018-09-11       Impact factor: 5.048

  10 in total

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