| Literature DB >> 27803925 |
Guitao Liu1, Yingjia Liu2, Lu Jin3, Cuidong Li3, Liping Nie3, Yanhua Wei3, Wenyu Wang4, Yuhong Xu4, Nuziguli Nusilaiti4, Ping Hua4, Xiujuan Li3, Xiaohua Wang3, Wenlong Wei3, Hamulati Wufuer3.
Abstract
Objective. To observe the curative effect of VAWI on Xinjiang Uygur patients with silicosis fibrosis. Methods. After we diagnosed the 40 patients with the first phase of silicosis, we randomly divided them into two groups: the basic treatment group (group A, n = 20) and the VAWI group (group B, n = 20). At the same time, we selected the age-matched healthy patients (n = 20). We applied the combined protein chip with SELDI-TOF-MS to carry out the serum analysis. The data were analyzed throughout data preprocessing, difference in PEAK screening, hierarchical cluster analysis, and Principal Component Analysis (PCA). We built decision tree model and predict the difference between the PEAK corresponding proteins. Results. The proteins peaks corresponding to name, predicted protein, and gene name were as follows: M2001_69, amyloid beta a4 protein, APP, and M2017_02, amyloid beta a4 protein, APP. The different expression of proteins in patients with silicosis was found before and after with VAWI treatment. The predicted proteins were as follows: M1982_50, amyloid beta a4 protein, APP; M3164_50, fibrinogen alpha chain frag, FGA; M3379_28, fibrinogen alpha chain frag, FGA; and so on. Conclusion. VAWI presented curative effect on patients with silicosis fibrosis via the alternation of proteins expression in serum.Entities:
Mesh:
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Year: 2016 PMID: 27803925 PMCID: PMC5075590 DOI: 10.1155/2016/5139651
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Grouping and sample quantity in detail.
| Groups | Group A-Q | Group A-H | Group B-Q | Group B-H |
|---|---|---|---|---|
| Clinical serum samples (cases) | 20 | 20 | 20 | 20 |
A-Q versus A-H group differences in peak filtering.
| SAMP_GRP |
|
| VIP | A-Q | A-Q | A-Q | A-Q | ⋯ | A-H | A-H | A-H | A-H | ⋯ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| M1004_63 | 0.039989471 | 0.415818706 | 1.16467 | 22.95604025 | 22.75923654 | 26.75614087 | 19.74283745 | ? | 19.86973828 | 22.78794232 | 18.45321078 | 15.93007727 | ? |
| M1019_45 | 0.002325058 | 0.220851981 | 2.23625 | 14.85695691 | 11.13177835 | 14.7041591 | 11.72356236 | ? | 14.75674034 | 7.622252274 | 9.058499342 | 8.522960615 | ? |
| M1123_40 | 0.044054031 | 0.427081143 | 1.27539 | 4.612171108 | 3.101201241 | 2.334913184 | 4.269188349 | ? | 3.197059112 | 4.448648643 | 0.312502018 | 0.26800485 | ? |
| M1146_35 | 0.036233902 | 0.40385461 | 2.52543 | 12.13544892 | 11.13549277 | 8.64778072 | 7.818968812 | ? | 8.508263162 | 5.841696314 | 1.494565651 | 1.373904899 | ? |
| M1150_36 | 0.000707626 | 0.220851981 | 1.73778 | 11.59222276 | 5.959793927 | 9.678156541 | 7.526991361 | ? | 6.925216398 | 4.861417086 | 2.548174863 | 1.98263985 | ? |
| M1207_98 | 0.013616562 | 0.299041303 | 2.71017 | 9.727282369 | 3.287925922 | 4.333702022 | 3.368115366 | ? | 3.87734566 | 3.458762177 | 0.917583662 | 0.353833452 | ? |
| M1216_31 | 0.006389618 | 0.247157411 | 2.00268 | 9.068674912 | 10.40280222 | 14.98574501 | 12.96053724 | ? | 13.06359903 | 6.247365256 | 4.877656968 | 3.084864891 | ? |
| ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |
B-Q versus B-H group differences in peak filtering.
| SAMP_GRP |
|
| VIP | B-Q | B-Q | B-Q | B-Q | ⋯ | B-H | B-H | B-H | B-H | ⋯ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| M1004_63 | 0.036233902 | 0.117118797 | 4.47584 | 20.93159093 | 23.06330811 | 15.91894724 | 27.61736757 | ? | 26.49269238 | 27.1344438 | 23.31498178 | 13.71342507 | ? |
| M1009_81 | 0.001432419 | 0.043568027 | 7.15663 | 48.79132299 | 46.95529883 | 48.87003438 | 54.19353556 | ? | 43.63272086 | 43.98593065 | 44.75965014 | 42.28380538 | ? |
| M1234_44 | 0.026641846 | 0.101306267 | 1.27316 | −0.796230455 | 1.453932033 | 3.966102148 | 4.890168124 | ? | 4.084448225 | −0.746040616 | 0.74709049 | 1.27757159 | ? |
| M1625_88 | 0.00271225 | 0.044951919 | 1.90781 | 0.786445814 | 2.048543355 | 2.910415223 | 9.575057215 | ? | 3.389356609 | −0.958622179 | −0.105883517 | 1.318096198 | ? |
| M1982_50 | 0.048440933 | 0.135305336 | 1.00893 | 0.242692484 | 1.150477702 | 0.154858982 | 1.569664624 | ? | −1.489712488 | −0.378626936 | −1.455122429 | 1.014149656 | ? |
| M2506_71 | 0.029575348 | 0.106704052 | 1.86031 | 4.933817334 | 6.599231237 | 2.490269656 | 2.000045877 | ? | 0.387148195 | 0.056803343 | 1.56353917 | 1.844580411 | ? |
| M2648_11 | 0.004859924 | 0.049028461 | 1.31311 | 0.569065076 | −0.210226171 | 0.308796758 | −0.226233975 | ? | 1.755490095 | 2.811816812 | 0.19201706 | 0.346710763 | ? |
| ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |
Figure 1A-Q versus A-H difference in peak clustering results.
Figure 2B-Q versus B-H difference in peak clustering results.
Figure 3PCA and OPLS-DA results. (a) A-Q versus A-H PCA scoring chart. (b) B-Q versus B-H PCA scoring figure. (c) A-Q versus A-H group OPLS-DA scoring figure. (d) A-Q versus A-H group permutation test chart. (e) A-Q versus A-H group OPLS-DA load diagram. (f) B-Q versus B-H group OPLS-DA and score chart. (g) B-Q versus B-H group displacement test diagram. (h) B-Q versus B-H group OPLS-DA load diagram.
| Model | Type |
|
|
|
|
| Title |
|---|---|---|---|---|---|---|---|
| M1 | OPLS-DA | 1 + 1 + 0 | 40 | 0.278 | 0.803 | 0.132 | A-Q versus A-H |
| M2 | OPLS-DA | 1 + 1 + 0 | 40 | 0.275 | 0.779 | 0.268 | B-Q versus B-H |
Figure 4
Figure 5A-Q versus A-H group differential protein predicting outcomes.
| SAMP_GRP |
|
| VIP | ID | MZ_SELDI | Predicted_protein | Theoretical_MZ | Gene_name |
|---|---|---|---|---|---|---|---|---|
| M2001_69 | 0.013616562 | 0.299041303 | 1.81131 | M2001_69 | 2001.69 | Amyloid beta a4 protein | 1953.1 | APP |
| M2017_02 | 0.00271225 | 0.220851981 | 2.50106 | M2017_02 | 2017.02 | Amyloid beta a4 protein | 1953.1 | APP |
| M4144_81 | 0.00365448 | 0.220851981 | 1.30244 | M4144_81 | 4144.81 | Plasma protease c1 inhibitor frag | 4152.87 | SERPING1 |
| M4478_27 | 0.00365448 | 0.220851981 | 2.15012 | M4478_27 | 4478.27 | Alpha-1-antichymotrypsin, Alpha-1-antichymotrypsin frag | 4343.65 | SERPINA3 |
| M4861_39 | 0.048440933 | 0.437642642 | 1.32359 | M4861_39 | 4861.39 | Neurosecretory protein vgf frag | 4823.5 | VGF |
| M5642_48 | 0.007295609 | 0.254483755 | 1.30207 | M5642_48 | 5642.48 | Fibrinogen alpha chain frag | 5904.22 | FGA |
| M7564_68 | 0.012079239 | 0.29154291 | 1.54656 | M7564_68 | 7564.68 | Osteopontin frag | 7658.19 | SPP1 |
B-Q VS B-H group differential protein predicting outcomes.
| SAMP_GRP |
|
| VIP | ID | MZ_SELDI | Predicted_protein | Theoretical_MZ | Gene_name |
|---|---|---|---|---|---|---|---|---|
| M1982_50 | 0.048440933 | 0.135305336 | 1.00893 | M1982_50 | 1982.5 | Amyloid beta a4 protein | 1953.1 | APP |
| M3164_50 | 0.039989471 | 0.122089598 | 1.30991 | M3164_50 | 3164.5 | Fibrinogen alpha chain frag | 3262.47 | FGA |
| M3379_28 | 0.000707626 | 0.043568027 | 1.5808 | M3379_28 | 3379.28 | Fibrinogen alpha chain frag | 3262.47 | FGA |
| M3539_61 | 0.021484375 | 0.091602781 | 1.04809 | M3539_61 | 3539.61 | Neutrophil defensin 1, neutrophil defensin 3 | 3448.09 | DEFA1 |
| M3825_21 | 0.000585556 | 0.043568027 | 1.10767 | M3825_21 | 3825.21 | Neurosecretory protein vgf frag | 3688.03 | VGF |
| M4062_14 | 0.021484375 | 0.091602781 | 1.21004 | M4062_14 | 4062.14 | Plasma protease c1 inhibitor frag | 4152.87 | SERPING1 |
| M4076_27 | 0.023950577 | 0.095815237 | 1.32528 | M4076_27 | 4076.27 | Plasma protease c1 inhibitor frag | 4152.87 | SERPING1 |
| M4129_92 | 0.013616562 | 0.073476016 | 1.06756 | M4129_92 | 4129.92 | Plasma protease c1 inhibitor frag | 4152.87 | SERPING1 |
| M4144_81 | 0.00271225 | 0.044951919 | 1.16841 | M4144_81 | 4144.81 | Plasma protease c1 inhibitor frag | 4152.87 | SERPING1 |
| M4161_30 | 0.005580902 | 0.051797761 | 1.08441 | M4161_30 | 4161.3 | Plasma protease c1 inhibitor frag | 4152.87 | SERPING1 |
| M4257_41 | 0.004859924 | 0.049028461 | 1.3339 | M4257_41 | 4257.41 | Plasma protease c1 inhibitor frag | 4152.87 | SERPING1 |
| M4421_61 | 0.007295609 | 0.058457352 | 1.1678 | M4421_61 | 4421.61 | Alpha-1-antichymotrypsin, alpha-1-antichymotrypsin frag | 4343.65 | SERPINA3 |
| M4652_50 | 0.019233704 | 0.087243925 | 1.29353 | M4652_50 | 4652.5 | Neurosecretory protein vgf frag | 4823.5 | VGF |
| M4671_03 | 0.021484375 | 0.091602781 | 1.52031 | M4671_03 | 4671.03 | Neurosecretory protein vgf frag | 4823.5 | VGF |
| M4979_81 | 0.00365448 | 0.047243739 | 1.1581 | M4979_81 | 4979.81 | Neurosecretory protein vgf frag | 4823.5 | VGF |
| M6194_61 | 0.001209259 | 0.043568027 | 1.17401 | M6194_61 | 6194.61 | Apolipoprotein c-i | 6432.35 | APOC1 |
| M6814_07 | 0.029575348 | 0.106704052 | 1.26252 | M6814_07 | 6814.07 | Transthyretin | 6880 | TTR |
| M7171_26 | 0.001689911 | 0.043568027 | 1.176 | M7171_26 | 7171.26 | Transthyretin | 6880 | TTR |
| M7765_40 | 0.010688782 | 0.067412421 | 2.95658 | M7765_40 | 7765.4 | Osteopontin frag | 7658.19 | SPP1 |
| M7970_76 | 0.021484375 | 0.091602781 | 1.23426 | M7970_76 | 7970.76 | Osteopontin frag | 7658.19 | SPP1 |
| M8033_66 | 0.019233704 | 0.087243925 | 1.54665 | M8033_66 | 8033.66 | Osteopontin frag | 7658.19 | SPP1 |
| M8139_51 | 0.039989471 | 0.122089598 | 1.34496 | M8139_51 | 8139.51 | Hemoglobin subunit beta | 7931.8 | HBB |
| M9187_15 | 0.026641846 | 0.101306267 | 3.63548 | M9187_15 | 9187.15 | Apolipoprotein a-ii | 9303.65 | APOA2 |
| M9285_47 | 0.017181396 | 0.082753919 | 2.37145 | M9285_47 | 9285.47 | Apolipoprotein a-ii | 9303.65 | APOA2 |
| M9414_68 | 0.036233902 | 0.117118797 | 2.14727 | M9414_68 | 9414.68 | Apolipoprotein a-ii | 9303.65 | APOA2 |
| M9440_33 | 0.029575348 | 0.106704052 | 1.58489 | M9440_33 | 9440.33 | Apolipoprotein a-ii | 9303.65 | APOA2 |
| M9492_65 | 0.002325058 | 0.044562279 | 1.54296 | M9492_65 | 9492.65 | Apolipoprotein a-ii | 9303.65 | APOA2 |
| M13750_7 | 0.00365448 | 0.047243739 | 1.49453 | M13750_7 | 13750.7 | Cystatin-c | 13347.14 | CST3 |
| M13886_7 | 0.004859924 | 0.049028461 | 1.84674 | M13886_7 | 13886.7 | Cystatin-c | 13347.14 | CST3 |
| M14042_5 | 0.003152847 | 0.046165766 | 1.66163 | M14042_5 | 14042.5 | Transthyretin | 13761.41 | TTR |
| M15118_8 | 0.010688782 | 0.067412421 | 1.14482 | M15118_8 | 15118.8 | Hemoglobin subunit beta | 15867.22 | HBB |
| M15858_3 | 0.036233902 | 0.117118797 | 1.09762 | M15858_3 | 15858.3 | Hemoglobin subunit beta | 15867.22 | HBB |
| M16052_7 | 0.00271225 | 0.044951919 | 2.55714 | M16052_7 | 16052.7 | Hemoglobin subunit beta | 15867.22 | HBB |
| M16231_2 | 0.008308411 | 0.061599564 | 1.65407 | M16231_2 | 16231.2 | Hemoglobin subunit beta | 15867.22 | HBB |