Literature DB >> 2780292

Conformations in crystals and solutions of d(CACGTG), d(CCGCGG) and d(GGCGCC) studied by vibrational spectroscopy.

L Urpi1, J P Ridoux, J Liquier, N Verdaguer, I Fita, J A Subirana, F Iglesias, T Huynh-Dinh, J Igolen, E Taillandier.   

Abstract

Crystals of self complementary DNA hexamers d(CACGTG), d(CCGCGG) and d(GGCGCC) were grown by vapour diffusion technique and studied by microRaman and microIR spectroscopies. The oligonucleotides were studied in parallel in solution by vibrational spectroscopy. A B- greater than Z transition was detected by Raman spectroscopy during the crystallization process for d(CACGTG). Vibrational spectroscopy shows that the d(GGCGCC) crystals adopt a B geometry. On the contrary the d(CCGCGG) sequence which is shown to be able to undergo in solution or in films quite easily the B- greater than Z transition, remains trapped in crystals in a geometry which may correspond to an intermediate conformation often proposed in models of the B- greater than Z transition. The crystals used in this study were characterized by X-ray diffraction. The unit cell and space group have been determined.

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Year:  1989        PMID: 2780292      PMCID: PMC318358          DOI: 10.1093/nar/17.16.6669

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  15 in total

1.  Molecular structure of a left-handed double helical DNA fragment at atomic resolution.

Authors:  A H Wang; G J Quigley; F J Kolpak; J L Crawford; J H van Boom; G van der Marel; A Rich
Journal:  Nature       Date:  1979-12-13       Impact factor: 49.962

Review 2.  The chemistry and biology of left-handed Z-DNA.

Authors:  A Rich; A Nordheim; A H Wang
Journal:  Annu Rev Biochem       Date:  1984       Impact factor: 23.643

3.  Characterization of intermediate conformational states in the B in equilibrium Z transitions of poly(dG-dC).poly(dG-dC).

Authors:  S Goto
Journal:  Biopolymers       Date:  1984-11       Impact factor: 2.505

4.  Temperature-dependent reversible transition of poly(dCdG).poly(dCdG) in ethanolic and methanolic solutions.

Authors:  K B Hall; M F Maestre
Journal:  Biopolymers       Date:  1984-11       Impact factor: 2.505

5.  DNA fragment conformations. 1H-NMR comparative studies of helix-coil transition and conformation of d(C-A-C-G-T-G) and d(G-T-G-C-A-C). Influence of helix formation on proton chemical shifts.

Authors:  S Tran-Dinh; J M Neumann; J Taboury; T Huynh-Dinh; S Renous; B Genissel; J Igolen
Journal:  Eur J Biochem       Date:  1983-07-01

6.  Raman spectroscopic elucidation of DNA backbone conformations for poly(dG-dT).poly(dA-dC) and poly(dA-dT).poly(dA-dT) in CsF solution.

Authors:  S P Fodor; P A Starr; T G Spiro
Journal:  Biopolymers       Date:  1985-08       Impact factor: 2.505

7.  Sequence dependence of conformations of self-complementary duplex tetradeoxynucleotides containing cytosine and guanine.

Authors:  G A Thomas; W L Peticolas
Journal:  Biochemistry       Date:  1984-07-03       Impact factor: 3.162

8.  The Raman spectra of left-handed DNA oligomers incorporating adenine-thymine base pairs+.

Authors:  J M Benevides; A H Wang; G A van der Marel; J H van Boom; A Rich; G J Thomas
Journal:  Nucleic Acids Res       Date:  1984-07-25       Impact factor: 16.971

9.  Characterization of DNA structures by Raman spectroscopy: high-salt and low-salt forms of double helical poly(dG-dC) in H2O and D2O solutions and application to B, Z and A-DNA.

Authors:  J M Benevides; G J Thomas
Journal:  Nucleic Acids Res       Date:  1983-08-25       Impact factor: 16.971

Review 10.  Raman spectroscopy study of the B-Z transition in (dG-dC)n.(dG-dC)n and a DNA restriction fragment.

Authors:  R M Wartell; J T Harrell; W Zacharias; R D Wells
Journal:  J Biomol Struct Dyn       Date:  1983-10
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  2 in total

1.  Comparison of the solution and crystal conformations of (G + C)-rich fragments of DNA.

Authors:  M Vorlícková; J A Subirana; J Chládková; I Tejralová; T Huynh-Dinh; L Arnold; J Kypr
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

2.  Demonstration of Z-d(5BrCGAT5BrCG) and B-d(CGCGATCGCG) form crystal structures in DNA-cobalt hexammine complexes by Kr 647.1 nm excitation of Raman spectra.

Authors:  J M Benevides; A H Wang; G J Thomas
Journal:  Nucleic Acids Res       Date:  1993-03-25       Impact factor: 16.971

  2 in total

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