Literature DB >> 27796615

Enabling drug discovery project decisions with integrated computational chemistry and informatics.

Vickie Tsui1, Daniel F Ortwine1, Jeffrey M Blaney2.   

Abstract

Computational chemistry/informatics scientists and software engineers in Genentech Small Molecule Drug Discovery collaborate with experimental scientists in a therapeutic project-centric environment. Our mission is to enable and improve pre-clinical drug discovery design and decisions. Our goal is to deliver timely data, analysis, and modeling to our therapeutic project teams using best-in-class software tools. We describe our strategy, the organization of our group, and our approaches to reach this goal. We conclude with a summary of the interdisciplinary skills required for computational scientists and recommendations for their training.

Keywords:  Cheminformatics; Computational chemistry; Discovery; Drug; Drug design; Genentech; Software

Mesh:

Year:  2016        PMID: 27796615     DOI: 10.1007/s10822-016-9988-y

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  5 in total

1.  An integrated suite of modeling tools that empower scientists in structure- and property-based drug design.

Authors:  Jianwen A Feng; Ignacio Aliagas; Philippe Bergeron; Jeff M Blaney; Erin K Bradley; Michael F T Koehler; Man-Ling Lee; Daniel F Ortwine; Vickie Tsui; Johnny Wu; Alberto Gobbi
Journal:  J Comput Aided Mol Des       Date:  2015-04-29       Impact factor: 3.686

2.  Physicochemical and DMPK in silico models: facilitating their use by medicinal chemists.

Authors:  Daniel F Ortwine; Ignacio Aliagas
Journal:  Mol Pharm       Date:  2013-02-27       Impact factor: 4.939

3.  Small-Molecule Library Subset Screening as an Aid for Accelerating Lead Identification.

Authors:  Maureen H Beresini; Yichin Liu; Timothy D Dawes; Kevin R Clark; Linda Orren; Stephen Schmidt; Rebecca Turincio; Steven W Jones; Richard A Rodriguez; Peter Thana; Daniel Hascall; Daniel P Gross; Nicholas J Skelton
Journal:  J Biomol Screen       Date:  2014-02-11

4.  Rationalizing tight ligand binding through cooperative interaction networks.

Authors:  Bernd Kuhn; Julian E Fuchs; Michael Reutlinger; Martin Stahl; Neil R Taylor
Journal:  J Chem Inf Model       Date:  2011-12-09       Impact factor: 4.956

5.  Atom-Atom-Path similarity and Sphere Exclusion clustering: tools for prioritizing fragment hits.

Authors:  Alberto Gobbi; Man-Ling Lee; Anthony M Giannetti; Huifen Chen
Journal:  J Cheminform       Date:  2015-03-25       Impact factor: 5.514

  5 in total
  2 in total

1.  Contemporary Computational Applications and Tools in Drug Discovery.

Authors:  Philip B Cox; Rishi Gupta
Journal:  ACS Med Chem Lett       Date:  2022-06-01       Impact factor: 4.632

2.  Implicit-descriptor ligand-based virtual screening by means of collaborative filtering.

Authors:  Raghuram Srinivas; Pavel V Klimovich; Eric C Larson
Journal:  J Cheminform       Date:  2018-11-22       Impact factor: 5.514

  2 in total

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