Literature DB >> 27795312

An Aminotransferase Is Responsible for the Deamination of the N-Terminal Leucine and Required for Formation of Oxazolone Ring A in Methanobactin of Methylosinus trichosporium OB3b.

Wenyu Gu1, Bipin S Baral2, Alan A DiSpirito2, Jeremy D Semrau3.   

Abstract

Gene expression in methanotrophs has been shown to be affected by the availability of a variety of metals, most notably copper-regulating expression of alternative forms of methane monooxygenase. A copper-binding compound, or chalkophore, called methanobactin plays a key role in copper uptake in methanotrophs. Methanobactin is a ribosomally synthesized and posttranslationally modified peptide (RiPP) with two heterocyclic rings with an associated thioamide for each ring, formed from X-Cys dipeptide sequences that bind copper. The gene coding for the precursor polypeptide of methanobactin, mbnA, is part of a gene cluster, but the role of other genes in methanobactin biosynthesis is unclear. To begin to elucidate the function of these genes, we constructed an unmarked deletion of mbnABCMN in Methylosinus trichosporium OB3b and then homologously expressed mbnABCM using a broad-host-range cloning vector to determine the function of mbnN, annotated as coding for an aminotransferase. Methanobactin produced by this strain was found to be substantially different from wild-type methanobactin in that the C-terminal methionine was missing and only one of the two oxazolone rings was formed. Rather, in place of the N-terminal 3-methylbutanoyl-oxazolone-thioamide group, a leucine and a thioamide-containing glycine (Gly-Ψ) were found, indicating that MbnN is used for deamination of the N-terminal leucine of methanobactin and that this posttranslational modification is critical for closure of the N-terminal oxazolone ring in M. trichosporium OB3b. These studies provide new insights into methanobactin biosynthesis and also provide a platform for understanding the function of other genes in the methanobactin gene cluster. IMPORTANCE: Methanotrophs, microbes that play a critical role in the carbon cycle, are influenced by copper, with gene expression and enzyme activity changing as copper levels change. Methanotrophs produce a copper-binding compound, or chalkophore, called methanobactin for copper uptake, and methanobactin plays a key role in controlling methanotrophic activity. Methanobactin has also been shown to be effective in the treatment of Wilson disease, an autosomal recessive disorder where the human body cannot correctly assimilate copper. It is important to characterize the methanobactin biosynthesis pathway to understand how methanotrophs respond to their environment as well as to optimize the use of methanobactin for the treatment of copper-related diseases such as Wilson disease. Here we show that mbnN, encoding an aminotransferase, is involved in the deamination of the N-terminal leucine and necessary for the formation of one but not both of the heterocyclic rings in methanobactin that are responsible for copper binding.
Copyright © 2016 American Society for Microbiology.

Entities:  

Keywords:  aminotransferase; methanobactin; methanotrophy; ribosomally synthesized and posttranslationally modified peptide

Mesh:

Substances:

Year:  2016        PMID: 27795312      PMCID: PMC5165116          DOI: 10.1128/AEM.02619-16

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  21 in total

Review 1.  Wilson's disease.

Authors:  Aftab Ala; Ann P Walker; Keyoumars Ashkan; James S Dooley; Michael L Schilsky
Journal:  Lancet       Date:  2007-02-03       Impact factor: 79.321

2.  Isolation of methanobactin from the spent media of methane-oxidizing bacteria.

Authors:  Nathan L Bandow; Warren H Gallagher; Lee Behling; Dong W Choi; Jeremy D Semrau; Scott C Hartsel; Valerie S Gilles; Alan A Dispirito
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

3.  Enrichment, isolation and some properties of methane-utilizing bacteria.

Authors:  R Whittenbury; K C Phillips; J F Wilkinson
Journal:  J Gen Microbiol       Date:  1970-05

4.  Purification and physical-chemical properties of methanobactin: a chalkophore from Methylosinus trichosporium OB3b.

Authors:  Hyung J Kim; Nadezhda Galeva; Cynthia K Larive; Michail Alterman; David W Graham
Journal:  Biochemistry       Date:  2005-04-05       Impact factor: 3.162

5.  Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum.

Authors:  A Schäfer; A Tauch; W Jäger; J Kalinowski; G Thierbach; A Pühler
Journal:  Gene       Date:  1994-07-22       Impact factor: 3.688

Review 6.  Methanobactin and the Link between Copper and Bacterial Methane Oxidation.

Authors:  Alan A DiSpirito; Jeremy D Semrau; J Colin Murrell; Warren H Gallagher; Christopher Dennison; Stéphane Vuilleumier
Journal:  Microbiol Mol Biol Rev       Date:  2016-03-16       Impact factor: 11.056

7.  A comparison of methanobactins from Methylosinus trichosporium OB3b and Methylocystis strain Sb2 predicts methanobactins are synthesized from diverse peptide precursors modified to create a common core for binding and reducing copper ions.

Authors:  Benjamin D Krentz; Heidi J Mulheron; Jeremy D Semrau; Alan A Dispirito; Nathan L Bandow; Daniel H Haft; Stéphane Vuilleumier; J Colin Murrell; Marcus T McEllistrem; Scott C Hartsel; Warren H Gallagher
Journal:  Biochemistry       Date:  2010-11-04       Impact factor: 3.162

8.  The biogenic methanobactin is an effective chelator for copper in a rat model for Wilson disease.

Authors:  Karl H Summer; Josef Lichtmannegger; Nathan Bandow; Don W Choi; Alan A DiSpirito; Bernhard Michalke
Journal:  J Trace Elem Med Biol       Date:  2011-01-15       Impact factor: 3.849

9.  Spectral and thermodynamic properties of Ag(I), Au(III), Cd(II), Co(II), Fe(III), Hg(II), Mn(II), Ni(II), Pb(II), U(IV), and Zn(II) binding by methanobactin from Methylosinus trichosporium OB3b.

Authors:  Dong W Choi; Young S Do; Corbin J Zea; Marcus T McEllistrem; Sung-W Lee; Jeremy D Semrau; Nicola L Pohl; Clint J Kisting; Lori L Scardino; Scott C Hartsel; Eric S Boyd; Gill G Geesey; Theran P Riedel; Peter H Shafe; Kim A Kranski; John R Tritsch; William E Antholine; Alan A DiSpirito
Journal:  J Inorg Biochem       Date:  2006-09-20       Impact factor: 4.155

10.  Methanobactin, a copper-acquisition compound from methane-oxidizing bacteria.

Authors:  Hyung J Kim; David W Graham; Alan A DiSpirito; Michail A Alterman; Nadezhda Galeva; Cynthia K Larive; Dan Asunskis; Peter M A Sherwood
Journal:  Science       Date:  2004-09-10       Impact factor: 47.728

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  12 in total

Review 1.  Metals and Methanotrophy.

Authors:  Jeremy D Semrau; Alan A DiSpirito; Wenyu Gu; Sukhwan Yoon
Journal:  Appl Environ Microbiol       Date:  2018-03-01       Impact factor: 4.792

Review 2.  Biosynthesis and Chemical Applications of Thioamides.

Authors:  Nilkamal Mahanta; D Miklos Szantai-Kis; E James Petersson; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2019-01-30       Impact factor: 5.100

Review 3.  Methanobactins: Maintaining copper homeostasis in methanotrophs and beyond.

Authors:  Grace E Kenney; Amy C Rosenzweig
Journal:  J Biol Chem       Date:  2018-01-18       Impact factor: 5.157

Review 4.  Chalkophores.

Authors:  Grace E Kenney; Amy C Rosenzweig
Journal:  Annu Rev Biochem       Date:  2018-04-18       Impact factor: 23.643

5.  Recent Advances in the Genetic Manipulation of Methylosinus trichosporium OB3b.

Authors:  Soo Y Ro; Amy C Rosenzweig
Journal:  Methods Enzymol       Date:  2018-04-11       Impact factor: 1.600

6.  Methanobactin from Methylosinus trichosporium OB3b inhibits N2O reduction in denitrifiers.

Authors:  Jin Chang; Wenyu Gu; Doyoung Park; Jeremy D Semrau; Alan A DiSpirito; Sukhwan Yoon
Journal:  ISME J       Date:  2018-01-12       Impact factor: 10.302

7.  Repurposed HisC Aminotransferases Complete the Biosynthesis of Some Methanobactins.

Authors:  Yun Ji Park; Grace E Kenney; Luis F Schachner; Neil L Kelleher; Amy C Rosenzweig
Journal:  Biochemistry       Date:  2018-05-10       Impact factor: 3.162

8.  Oxygen Generation via Water Splitting by a Novel Biogenic Metal Ion-Binding Compound.

Authors:  Philip Dershwitz; Nathan L Bandow; Junwon Yang; Jeremy D Semrau; Marcus T McEllistrem; Rafael A Heinze; Matheus Fonseca; Joshua C Ledesma; Jacob R Jennett; Ana M DiSpirito; Navjot S Athwal; Mark S Hargrove; Thomas A Bobik; Hans Zischka; Alan A DiSpirito
Journal:  Appl Environ Microbiol       Date:  2021-06-25       Impact factor: 4.792

Review 9.  Bacterial copper storage proteins.

Authors:  Christopher Dennison; Sholto David; Jaeick Lee
Journal:  J Biol Chem       Date:  2018-02-06       Impact factor: 5.157

10.  Evidence for methanobactin "Theft" and novel chalkophore production in methanotrophs: impact on methanotrophic-mediated methylmercury degradation.

Authors:  Christina S Kang-Yun; Xujun Liang; Philip Dershwitz; Wenyu Gu; Aloys Schepers; Andrew Flatley; Josef Lichtmannegger; Hans Zischka; Lijie Zhang; Xia Lu; Baohua Gu; Joshua C Ledesma; Daly J Pelger; Alan A DiSpirito; Jeremy D Semrau
Journal:  ISME J       Date:  2021-07-21       Impact factor: 10.302

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