Literature DB >> 27790979

Three-dimensional chromosome structures from energy landscape.

Gamze Gürsoy1, Jie Liang2.   

Abstract

Mesh:

Year:  2016        PMID: 27790979      PMCID: PMC5087004          DOI: 10.1073/pnas.1614535113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  18 in total

1.  The fractal globule as a model of chromatin architecture in the cell.

Authors:  Leonid A Mirny
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

2.  Population-based 3D genome structure analysis reveals driving forces in spatial genome organization.

Authors:  Harianto Tjong; Wenyuan Li; Reza Kalhor; Chao Dai; Shengli Hao; Ke Gong; Yonggang Zhou; Haochen Li; Xianghong Jasmine Zhou; Mark A Le Gros; Carolyn A Larabell; Lin Chen; Frank Alber
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-07       Impact factor: 11.205

3.  Transferable model for chromosome architecture.

Authors:  Michele Di Pierro; Bin Zhang; Erez Lieberman Aiden; Peter G Wolynes; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-29       Impact factor: 11.205

4.  Systematic protein location mapping reveals five principal chromatin types in Drosophila cells.

Authors:  Guillaume J Filion; Joke G van Bemmel; Ulrich Braunschweig; Wendy Talhout; Jop Kind; Lucas D Ward; Wim Brugman; Inês J de Castro; Ron M Kerkhoven; Harmen J Bussemaker; Bas van Steensel
Journal:  Cell       Date:  2010-09-30       Impact factor: 41.582

5.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

6.  A three-dimensional model of the yeast genome.

Authors:  Zhijun Duan; Mirela Andronescu; Kevin Schutz; Sean McIlwain; Yoo Jung Kim; Choli Lee; Jay Shendure; Stanley Fields; C Anthony Blau; William S Noble
Journal:  Nature       Date:  2010-05-02       Impact factor: 49.962

7.  Topological domains in mammalian genomes identified by analysis of chromatin interactions.

Authors:  Jesse R Dixon; Siddarth Selvaraj; Feng Yue; Audrey Kim; Yan Li; Yin Shen; Ming Hu; Jun S Liu; Bing Ren
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962

8.  Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data.

Authors:  Jean-Philippe Fortin; Kasper D Hansen
Journal:  Genome Biol       Date:  2015-08-28       Impact factor: 13.583

9.  Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression.

Authors:  Ferhat Ay; Evelien M Bunnik; Nelle Varoquaux; Sebastiaan M Bol; Jacques Prudhomme; Jean-Philippe Vert; William Stafford Noble; Karine G Le Roch
Journal:  Genome Res       Date:  2014-03-26       Impact factor: 9.043

10.  Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains.

Authors:  Daniel Jost; Pascal Carrivain; Giacomo Cavalli; Cédric Vaillant
Journal:  Nucleic Acids Res       Date:  2014-08-04       Impact factor: 16.971

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  1 in total

1.  A simulation model of heterochromatin formation at submolecular detail.

Authors:  Michael R Williams; Yan Xiaokang; Nathaniel A Hathaway; Dmitri Kireev
Journal:  iScience       Date:  2022-06-14
  1 in total

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