Literature DB >> 27779264

The death of the Job plot, transparency, open science and online tools, uncertainty estimation methods and other developments in supramolecular chemistry data analysis.

D Brynn Hibbert1, Pall Thordarson2.   

Abstract

Data analysis is central to understanding phenomena in host-guest chemistry. We describe here recent developments in this field starting with the revelation that the popular Job plot method is inappropriate for most problems in host-guest chemistry and that the focus should instead be on systematically fitting data and testing all reasonable binding models. We then discuss approaches for estimating uncertainties in binding studies using case studies and simulations to highlight key issues. Related to this is the need for ready access to data and transparency in the methodology or software used, and we demonstrate an example a webportal () that aims to address this issue. We conclude with a list of best-practice protocols for data analysis in supramolecular chemistry that could easily be translated to other related problems in chemistry including measuring rate constants or drug IC50 values.

Year:  2016        PMID: 27779264     DOI: 10.1039/c6cc03888c

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  74 in total

1.  Polymer Electrochromism Driven by Metabolic Activity Facilitates Rapid and Facile Bacterial Detection and Susceptibility Evaluation.

Authors:  Jiayingzi Wu; Yifan Zhu; Liyan You; Pu-Ting Dong; Jianguo Mei; Ji-Xin Cheng
Journal:  Adv Funct Mater       Date:  2020-09-13       Impact factor: 18.808

2.  Conformationally Mobile Acyclic Cucurbit[n]uril-Type Receptors Derived from an S-shaped Methylene Bridged Glycoluril Pentamer.

Authors:  Kimberly G Brady; Laura Gilberg; David Sigwalt; Joshua Bistany-Riebman; Steven Murkli; Jared Klemm; Petr Kulhánek; Vladimír Šindelář; Lyle Isaacs
Journal:  Supramol Chem       Date:  2020-08-13       Impact factor: 1.688

3.  Structural Basis of Paxillin Recruitment by Kindlin-2 in Regulating Cell Adhesion.

Authors:  Liang Zhu; Huan Liu; Fan Lu; Jun Yang; Tatiana V Byzova; Jun Qin
Journal:  Structure       Date:  2019-10-04       Impact factor: 5.006

4.  Aggregation and Solvation of Sodium Hexamethyldisilazide: Across the Solvent Spectrum.

Authors:  Ryan A Woltornist; David B Collum
Journal:  J Org Chem       Date:  2021-01-20       Impact factor: 4.354

5.  Macrophage Migration and Phagocytosis Are Controlled by Kindlin-3's Link to the Cytoskeleton.

Authors:  Huan Liu; Liang Zhu; Tejasvi Dudiki; Benjamin Gabanic; Logan Good; Eugene A Podrez; Olga A Cherepanova; Jun Qin; Tatiana V Byzova
Journal:  J Immunol       Date:  2020-02-24       Impact factor: 5.422

6.  Energy Transfer to Ni-Amine Complexes in Dual Catalytic, Light-Driven C-N Cross-Coupling Reactions.

Authors:  Max Kudisch; Chern-Hooi Lim; Pall Thordarson; Garret M Miyake
Journal:  J Am Chem Soc       Date:  2019-12-03       Impact factor: 15.419

7.  Structure of hRpn10 Bound to UBQLN2 UBL Illustrates Basis for Complementarity between Shuttle Factors and Substrates at the Proteasome.

Authors:  Xiang Chen; Danielle L Ebelle; Brandon J Wright; Vinidhra Sridharan; Evan Hooper; Kylie J Walters
Journal:  J Mol Biol       Date:  2019-01-18       Impact factor: 5.469

8.  Sodium Hexamethyldisilazide: Using 15N-29Si Scalar Coupling to Determine Aggregation and Solvation States.

Authors:  Ryan A Woltornist; David B Collum
Journal:  J Am Chem Soc       Date:  2020-04-01       Impact factor: 15.419

9.  Arylamine Analogs of Methylene Blue: Substituent Effect on Aggregation Behavior and DNA Binding.

Authors:  Alena Khadieva; Olga Mostovaya; Pavel Padnya; Valeriy Kalinin; Denis Grishaev; Dmitrii Tumakov; Ivan Stoikov
Journal:  Int J Mol Sci       Date:  2021-05-29       Impact factor: 5.923

10.  Coordination Chemistry of a Bis(Tetrazine) Tweezer: A Case of Host-Guest Behavior with Silver Salts.

Authors:  Clève D Mboyi; Ons Amamou; Paul Fleurat-Lessard; Julien Roger; Hélène Cattey; Charles H Devillers; Michel Meyer; Taoufik Boubaker; Jean-Cyrille Hierso
Journal:  Molecules       Date:  2021-05-05       Impact factor: 4.411

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