| Literature DB >> 27776172 |
T Ilyicheva1,2, A Durymanov1, I Susloparov1, N Kolosova1, N Goncharova1, S Svyatchenko1, O Petrova1, A Bondar3, V Mikheev1, A Ryzhikov1.
Abstract
The influenza epidemic in 2015-2016 in Russia is characterized by a sharp increase of influenza cases (beginning from the second week of 2016) with increased fatalities. Influenza was confirmed in 20 fatal cases registered among children (0-10 years), in 5 cases among pregnant women, and in 173 cases among elderly people (60 years and older). Two hundred and ninety nine people died from influenza were patients with some chronic problems. The overwhelming majority among the deceased (more than 98%) were not vaccinated against influenza. We isolated 109 influenza A(H1N1)pdm09 and one A(H3N2) virus strains from 501 autopsy material samples. The antigenic features of the strains were similar to the vaccine strains. A phylogenic analysis of hemagglutinin revealed that influenza A(H1N1)pdm09 virus strains belonged to 6B genetic group that had two main dominant subgroups during the 2015-2016 season. In Russia strains of the first group predominated. We registered an increased proportion of strains with D222G mutation in receptor-binding site. A herd immunity analysis carried out immediately prior to the epidemic showed that 34.4% blood sera samples collected in different regions of Russia were positive to A/California/07/09(H1N1)pdm09. We came to a conclusion that public awareness enhancement is necessary to reduce unreasonable refusals of vaccination.Entities:
Mesh:
Year: 2016 PMID: 27776172 PMCID: PMC5077104 DOI: 10.1371/journal.pone.0165332
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Seropositivity among study groups.
| Region of sample collection | Region 1 European Russia | Region 2 Ural and Western Siberia | Region 3 Eastern Siberia and Russian Far East | Across all regions | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Age group | 0–17 | 18–45 | 46–64 | 65> | Amount / % | 0–17 | 18–45 | 46–64 | 65> | Amount / % | 0–17 | 18–45 | 46–64 | 65> | Amount / % | Amount | % |
| Total sera, including sera positive to virus: | 2 0.2% | 717 52.7% | 545 40.1% | 96 7.1% | 1360 | 44 3.2% | 809 59.5% | 481 35.4% | 25 1.8% | 1359 | 22 1.8% | 696 55.7% | 421 33.7% | 111 8.9% | 1250 | 3969 | 100 |
| A(H1N1)pdm09 | 2 0.2% | 328 24.1% | 240 17.6% | 23 1.7% | 593/43.6% | 21 1.6% | 260 19.1% | 115 8.5% | 8 0.6% | 404/29.7% | 10 0.8% | 224 17.9% | 116 9.3% | 18 1.4% | 368/29.4% | 1365 | 34.4 |
| A(H3N2) | 0 0% | 59 4.3% | 44 3.2% | 11 0.8% | 114/8.4% | 14 1% | 79 5.8% | 46 3.4% | 0 0% | 139/10.2% | 0 0% | 46 3.7% | 17 1.4% | 2 0.2% | 65/5.2% | 318 | 8.0 |
| B (Victoria) | 0 0% | 155 11.4% | 111 8.2% | 18 1.3% | 284/20.9% | 9 0.7% | 287 21.1% | 120 8.8% | 4 0.3% | 420/30.9% | 5 0.4% | 210 16.8% | 130 10.4% | 33 2.6% | 378/30.2% | 1093 | 27.5 |
| B (Yamagata) | 1 0.1% | 410 30.2% | 244 17.9% | 52 3.8% | 707/52.0% | 38 2.8% | 398 29.3% | 209 15.4% | 12 0.9% | 657/48.3% | 17 1.4% | 313 25% | 188 15% | 76 6.1% | 594/47.5% | 1958 | 49.3 |
Characteristics of the patients presumably died from influenza in 2015–2016.
| Parameters | Numbers | Percent |
|---|---|---|
| M | 260 | 52 |
| F | 233 | 46 |
| n/a | 8 | 2 |
| 1 –European Russia | 353 | 71 |
| 2 –Ural and Western Siberia | 111 | 22 |
| 3 –Eastern Siberia and Russian Far East | 37 | 7 |
| 0–2 | 11 | 2 |
| 3–10 | 9 | 2 |
| 11–18 | 0 | 0 |
| 19–30 | 23 | 5 |
| 31–45 | 136 | 27 |
| 46–59 | 147 | 29 |
| 60 and older | 173 | 35 |
| n/a | 2 | 0 |
| 5 | 1 | |
| Chronic obstructive pulmonary disease | 16 | 3 |
| Other respiratory diseases (asthma, chronic bronchitis, etc.) | 9 | 2 |
| Cardiovascular system diseases | 27 | 6 |
| Diabetes | 39 | 8 |
| Oncological diseases | 11 | 2 |
| Obesity | 65 | 13 |
| Infectious diseases (acquired immune deficiency syndrome, hepatitis, tuberculosis) | 9 | 2 |
| Other | 7 | 1 |
| 8 | 2 | |
| n/a | 222 | 45 |
| 467 | 93 | |
Properties of influenza viruses isolated from autopsy material in 2015–2016 epidemic season.
| Region of sampling | Virus | Date of sample collection | Sex | Age | Date of vaccination | Passage (MDCK) | HI titer with ferret anti- A/California/07/2009 | HI titer with human serum after vaccination with “Grippol” | The drug concentration required to reduce NA activity by 50%, IC50, nМ | Sequences published in GISAID | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Oseltamivir | Zanamivir | HA | NA | NS | |||||||||
| A/California/07/2009 (CDC, Atlanta, the United States) | 2560 | 640 | 0.29 | 0.47 | |||||||||
| Influenza antigen A/California/7/ 2009 (NIBSC, the United Kingdom) | 2560 | - | - | - | |||||||||
| XW (Oseltamivir resistant) [ | 84.2–280.6 | 0.2–0.8 | |||||||||||
| OSAKA (Zanamivir resistant) [ | 0.1–0.5 | 123.7–334.5 | |||||||||||
| 1 | A/Alania/03/2016 | 06.01.2016 | f | 4 | no | 1 | 2560 | 160 | 0.50 | 0.63 | EPI694640 | EPI694641 | EPI694642 |
| 1 | A/Stavropol/07/2016 | 07.01.2016 | f | 53 | no | 1 | 2560 | 160 | 0.21 | 0.75 | EPI704203 | EPI704204 | EPI704205 |
| 1 | A/Stavropol/11/2016 | 07.01.2016 | f | 27 | no | 1 | 2560 | 160 | 0.52 | 0.72 | EPI704030 | EPI704031 | EPI704032 |
| 1 | A/Kaluga/13/2016 | 01.02.2016 | m | 66 | 30.10.2015 | 1 | 640 | 80 | 0.20 | 0.37 | EPI772567 | EPI772568 | EPI772569 |
| 1 | A/Saint-Petersburg/10/2016 | 03.01.2016 | m | 36 | no | 1 | 2560 | 160 | 0.51 | 0.70 | EPI700033 | EPI700034 | EPI700035 |
| 1 | A/Saint-Petersburg/22/2016 | 08.01.2016 | m | 41 | no | 1 | 2560 | 160 | 0.75 | 0.90 | EPI711130 | EPI748416 | EPI711131 |
| 1 | A/Saint-Petersburg/31/2016 | 01.01.2016 | m | 46 | no | 1 | 2560 | 320 | 0.37 | 0.55 | EPI711128 | EPI749107 | EPI711129 |
| 1 | A/Saint-Petersburg/39/2016 | 17.01.2016 | m | 41 | no | 1 | 2560 | 320 | 0.72 | 1.10 | EPI711208 | EPI749108 | EPI711209 |
| 1 | A/Saint-Petersburg/41/2016 | 18.01.2016 | m | 61 | no | 1 | 1280 | 320 | 0.88 | 1.03 | EPI711210 | EPI749109 | EPI711211 |
| 1 | A/Saint-Petersburg/46/2016 | 17.01.2016 | m | 76 | no | 1 | 2560 | 160 | 0.56 | 0.76 | EPI721829 | EPI721830 | EPI721831 |
| 1 | A/Saint-Petersburg/50/2016 | 25.01.2016 | m | 45 | no | 1 | 1280 | 160 | 1.06 | 1.23 | EPI748389 | EPI748390 | EPI748391 |
| 2 | A/Orenburg/05/2016 | 09.01.2016 | m | 57 | no | 1 | 2560 | 320 | 0.41 | 0.50 | EPI704206 | EPI704207 | EPI704208 |
| 2 | A/Noyabrsk/3/2016 | 11.02.2016 | f | 55 | no | 1 | 1280 | 160 | 0.24 | 0.47 | EPI772605 | EPI772606 | EPI772608 |
| 2 | A/Novosibirsk/181/2016 | 13.02.2016 | m | 59 | no | 1 | 1280 | 160 | 0.62 | 0.75 | EPI772612 | EPI772613 | EPI772614 |
| 3 | A/Chita/317/2016 | 28.01.2016 | f | 48 | no | 1 | 1280 | 160 | 0.68 | 0.80 | EPI772586 | EPI772587 | EPI772588 |
| Region | A(H3N2) virus | Sampling | Sex | Age | Vaccination | Passage | HI titer with A/Switzerland/9715293/2013 | HI titer with A/HongKong/4801/2014 | Oseltamivir | Zanamivir | HA | NA | NS |
| A/Switzerland/9715293/13(H3N2) | 1280 | 80 | 0.62 | 0.75 | |||||||||
| A/HongKong/4801/2014 (H3N2) | 80 | 640 | 0.78 | 0.93 | |||||||||
| 1 | A/Saratov/5/2016 | 11.01.2016 | m | 61 | no | 2 | 80 | 640 | 0.67 | 0.40 | EPI687295 | EPI687829 | EPI693968 |
* Regions of sampling: 1 –European Russia, 2 –Urals and Western Siberia, 3 –Eastern Siberia and Russian Far East.
Fig 1The phylogenetic tree of hemagglutinin protein of influenza A(H1N1)pdm09 virus.
Bold italics–reference strains; red–strains obtained from confirmed fatal cases; boxed–genetic subgroups. On the tree topology the main characteristic mutations and individual mutations are highlighted. Black diamond (◆)–strains isolated by the authors.
Fig 2The phylogenetic tree of hemagglutinin protein of influenza A(H3N2) virus.
Bold italics–vaccine strains; red–strain obtained from confirmed fatal cases in 2016; boxed–genetic subgroups. On the tree topology the main characteristic mutations and individual mutations are highlighted. Black diamond (◆)–strains obtained from confirmed fatal cases isolated by the authors.