Literature DB >> 27774698

The macro domain as fusion tag for carrier-driven crystallization.

Rebekka Wild1, Michael Hothorn1.   

Abstract

Obtaining well-ordered crystals remains a significant challenge in protein X-ray crystallography. Carrier-driven crystallization can facilitate crystal formation and structure solution of difficult target proteins. We obtained crystals of the small and highly flexible SPX domain from the yeast vacuolar transporter chaperone 4 (Vtc4) when fused to a C-terminal, non-cleavable macro tag derived from human histone macroH2A1.1. Initial crystals diffracted to 3.3 Å resolution. Reductive protein methylation of the fusion protein yielded a new crystal form diffracting to 2.1 Å. The structures were solved by molecular replacement, using isolated macro domain structures as search models. Our findings suggest that macro domain tags can be employed in recombinant protein expression in E. coli, and in carrier-driven crystallization.
© 2016 The Protein Society.

Entities:  

Keywords:  carrier-driven crystallization; crystallization tag; histone macroH2A; macro domain; recombinant protein expression

Mesh:

Substances:

Year:  2016        PMID: 27774698      PMCID: PMC5275734          DOI: 10.1002/pro.3073

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  46 in total

1.  Crystal structure of human T cell leukemia virus type 1 gp21 ectodomain crystallized as a maltose-binding protein chimera reveals structural evolution of retroviral transmembrane proteins.

Authors:  B Kobe; R J Center; B E Kemp; P Poumbourios
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

2.  A solubility-enhancement tag (SET) for NMR studies of poorly behaving proteins.

Authors:  P Zhou; A A Lugovskoy; G Wagner
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

3.  Splicing regulates NAD metabolite binding to histone macroH2A.

Authors:  Georg Kustatscher; Michael Hothorn; Céline Pugieux; Klaus Scheffzek; Andreas G Ladurner
Journal:  Nat Struct Mol Biol       Date:  2005-06-19       Impact factor: 15.369

4.  Structural insights into the mechanism of Escherichia coli YmdB: A 2'-O-acetyl-ADP-ribose deacetylase.

Authors:  Weichang Zhang; Chengliang Wang; Yang Song; Chen Shao; Xuan Zhang; Jianye Zang
Journal:  J Struct Biol       Date:  2015-10-19       Impact factor: 2.867

5.  New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis.

Authors:  N Ogawa; J DeRisi; P O Brown
Journal:  Mol Biol Cell       Date:  2000-12       Impact factor: 4.138

6.  A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation.

Authors:  Gyula Timinszky; Susanne Till; Paul O Hassa; Michael Hothorn; Georg Kustatscher; Bianca Nijmeijer; Julien Colombelli; Matthias Altmeyer; Ernst H K Stelzer; Klaus Scheffzek; Michael O Hottiger; Andreas G Ladurner
Journal:  Nat Struct Mol Biol       Date:  2009-08-13       Impact factor: 15.369

7.  NITROGEN LIMITATION ADAPTATION recruits PHOSPHATE2 to target the phosphate transporter PT2 for degradation during the regulation of Arabidopsis phosphate homeostasis.

Authors:  Bong Soo Park; Jun Sung Seo; Nam-Hai Chua
Journal:  Plant Cell       Date:  2014-01-28       Impact factor: 11.277

8.  Crystal structures of the X-domains of a Group-1 and a Group-3 coronavirus reveal that ADP-ribose-binding may not be a conserved property.

Authors:  Yvonne Piotrowski; Guido Hansen; A Linda Boomaars-van der Zanden; Eric J Snijder; Alexander E Gorbalenya; Rolf Hilgenfeld
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

9.  A family of macrodomain proteins reverses cellular mono-ADP-ribosylation.

Authors:  Gytis Jankevicius; Markus Hassler; Barbara Golia; Vladimir Rybin; Martin Zacharias; Gyula Timinszky; Andreas G Ladurner
Journal:  Nat Struct Mol Biol       Date:  2013-03-10       Impact factor: 15.369

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  3 in total

1.  Affinity enrichment and identification of inositol poly- and pyrophosphate interactomes.

Authors:  David Furkert; Michal Nadler-Holly; Dorothea Fiedler
Journal:  STAR Protoc       Date:  2021-01-14

2.  Viral macrodomains: a structural and evolutionary assessment of the pharmacological potential.

Authors:  Johannes Gregor Matthias Rack; Valentina Zorzini; Zihan Zhu; Marion Schuller; Dragana Ahel; Ivan Ahel
Journal:  Open Biol       Date:  2020-11-18       Impact factor: 6.411

3.  Mechanistic insights into the regulation of plant phosphate homeostasis by the rice SPX2 - PHR2 complex.

Authors:  Zeyuan Guan; Qunxia Zhang; Zhifei Zhang; Jiaqi Zuo; Juan Chen; Ruiwen Liu; Julie Savarin; Larissa Broger; Peng Cheng; Qiang Wang; Kai Pei; Delin Zhang; Tingting Zou; Junjie Yan; Ping Yin; Michael Hothorn; Zhu Liu
Journal:  Nat Commun       Date:  2022-03-24       Impact factor: 14.919

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.