Literature DB >> 27766520

Application of artificial neural network model combined with four biomarkers in auxiliary diagnosis of lung cancer.

Xiaoran Duan1, Yongli Yang2, Shanjuan Tan3, Sihua Wang4, Xiaolei Feng5, Liuxin Cui1, Feifei Feng6, Songcheng Yu7, Wei Wang8, Yongjun Wu9.   

Abstract

The purpose of the study was to explore the application of artificial neural network model in the auxiliary diagnosis of lung cancer and compare the effects of back-propagation (BP) neural network with Fisher discrimination model for lung cancer screening by the combined detections of four biomarkers of p16, RASSF1A and FHIT gene promoter methylation levels and the relative telomere length. Real-time quantitative methylation-specific PCR was used to detect the levels of three-gene promoter methylation, and real-time PCR method was applied to determine the relative telomere length. BP neural network and Fisher discrimination analysis were used to establish the discrimination diagnosis model. The levels of three-gene promoter methylation in patients with lung cancer were significantly higher than those of the normal controls. The values of Z(P) in two groups were 2.641 (0.008), 2.075 (0.038) and 3.044 (0.002), respectively. The relative telomere lengths of patients with lung cancer (0.93 ± 0.32) were significantly lower than those of the normal controls (1.16 ± 0.57), t = 4.072, P < 0.001. The areas under the ROC curve (AUC) and 95 % CI of prediction set from Fisher discrimination analysis and BP neural network were 0.670 (0.569-0.761) and 0.760 (0.664-0.840). The AUC of BP neural network was higher than that of Fisher discrimination analysis, and Z(P) was 0.76. Four biomarkers are associated with lung cancer. BP neural network model for the prediction of lung cancer is better than Fisher discrimination analysis, and it can provide an excellent and intelligent diagnosis tool for lung cancer.

Entities:  

Keywords:  Artificial neural network; Auxiliary diagnosis; DNA methylation; Lung cancer; Telomere

Mesh:

Substances:

Year:  2016        PMID: 27766520     DOI: 10.1007/s11517-016-1585-7

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  33 in total

1.  Determination of DPPH free radical scavenging activity: application of artificial neural networks.

Authors:  Khalid Hamid Musa; Aminah Abdullah; Ahmed Al-Haiqi
Journal:  Food Chem       Date:  2015-08-12       Impact factor: 7.514

2.  Development of two artificial neural network models to support the diagnosis of pulmonary tuberculosis in hospitalized patients in Rio de Janeiro, Brazil.

Authors:  Fábio S Aguiar; Rodrigo C Torres; João V F Pinto; Afrânio L Kritski; José M Seixas; Fernanda C Q Mello
Journal:  Med Biol Eng Comput       Date:  2016-03-25       Impact factor: 2.602

3.  Methylation markers for small cell lung cancer in peripheral blood leukocyte DNA.

Authors:  Liang Wang; Jeremiah A Aakre; Ruoxiang Jiang; Randolph S Marks; Yanhong Wu; Jun Chen; Stephen N Thibodeau; V Shane Pankratz; Ping Yang
Journal:  J Thorac Oncol       Date:  2010-06       Impact factor: 15.609

4.  Quantitative assessment of lung cancer associated with genes methylation in the peripheral blood.

Authors:  Shanjuan Tan; Changqing Sun; Xiaoling Wei; Yanqiang Li; Yongjun Wu; Zhen Yan; Feifei Feng; Jing Wang; Yiming Wu
Journal:  Exp Lung Res       Date:  2013-04-24       Impact factor: 2.459

5.  Classification of focal liver lesions on ultrasound images by extracting hybrid textural features and using an artificial neural network.

Authors:  Yoo Na Hwang; Ju Hwan Lee; Ga Young Kim; Yuan Yuan Jiang; Sung Min Kim
Journal:  Biomed Mater Eng       Date:  2015       Impact factor: 1.300

6.  Prognostic models in patients with non-small-cell lung cancer using artificial neural networks in comparison with logistic regression.

Authors:  Taizo Hanai; Yasushi Yatabe; Yusuke Nakayama; Takashi Takahashi; Hiroyuki Honda; Tetsuya Mitsudomi; Takeshi Kobayashi
Journal:  Cancer Sci       Date:  2003-05       Impact factor: 6.716

7.  Global DNA Methylation patterns on marsupial and devil facial tumour chromosomes.

Authors:  Emory D Ingles; Janine E Deakin
Journal:  Mol Cytogenet       Date:  2015-10-01       Impact factor: 2.009

8.  [DNA methylation of tumor suppressor genes located on chromosome 3p in non-small cell lung cancer].

Authors:  Haizhu Song; Jun Yi; Youwei Zhang; Rui Wang; Longbang Chen
Journal:  Zhongguo Fei Ai Za Zhi       Date:  2011-03

9.  [Prognostic value of methylation status of RASSF1A gene as an independent factor of non-small cell lung cancer].

Authors:  Hui Zhang; Shucai Zhang; Zongde Zhang; Hongyan Jia; Shuxiang Gu; Dan Zhao
Journal:  Zhongguo Fei Ai Za Zhi       Date:  2010-04

10.  Telomere length measurement by a novel monochrome multiplex quantitative PCR method.

Authors:  Richard M Cawthon
Journal:  Nucleic Acids Res       Date:  2009-01-07       Impact factor: 16.971

View more
  7 in total

1.  Predicting High Blood Pressure Using DNA Methylome-Based Machine Learning Models.

Authors:  Thi Mai Nguyen; Hoang Long Le; Kyu-Baek Hwang; Yun-Chul Hong; Jin Hee Kim
Journal:  Biomedicines       Date:  2022-06-14

2.  Adaptive back-stepping cancer control using Legendre polynomials.

Authors:  Saeed Khorashadizadeh; Ali Akbarzadeh Kalat
Journal:  IET Syst Biol       Date:  2020-02       Impact factor: 1.615

3.  EARN: an ensemble machine learning algorithm to predict driver genes in metastatic breast cancer.

Authors:  Leila Mirsadeghi; Reza Haji Hosseini; Ali Mohammad Banaei-Moghaddam; Kaveh Kavousi
Journal:  BMC Med Genomics       Date:  2021-05-07       Impact factor: 3.063

4.  Machine Learning Analysis of Immune Cells for Diagnosis and Prognosis of Cutaneous Melanoma.

Authors:  Huibin Du; Yan He; Wei Lu; Yu Han; Qi Wan
Journal:  J Oncol       Date:  2022-01-27       Impact factor: 4.375

5.  Identification of Signature Genes and Construction of an Artificial Neural Network Model of Prostate Cancer.

Authors:  Hongye Dong; Xu Wang
Journal:  J Healthc Eng       Date:  2022-04-07       Impact factor: 3.822

6.  Prediction of Gestational Diabetes Mellitus under Cascade and Ensemble Learning Algorithm.

Authors:  Jie Zhang; Fang Wang
Journal:  Comput Intell Neurosci       Date:  2022-07-14

7.  Improving lung cancer diagnosis by combining exhaled-breath data and clinical parameters.

Authors:  Sharina Kort; Marjolein Brusse-Keizer; Jan Willem Gerritsen; Hugo Schouwink; Emanuel Citgez; Frans de Jongh; Jan van der Maten; Suzy Samii; Marco van den Bogart; Job van der Palen
Journal:  ERJ Open Res       Date:  2020-03-16
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.