Literature DB >> 27765993

Mitochondrial Haplotype-based Identification of Root-knot Nematodes (Meloidogyne spp.) on Cut Foliage Crops in Florida.

Richard Baidoo1, Soumi Joseph1, Tesfamariam M Mengistu1, Janete A Brito2, Robert McSorley1, Robert H Stamps3, William T Crow1.   

Abstract

Florida accounts for more than 75% of the national cut foliage production. Unfortunately, root-knot nematodes (RKN) (Meloidogyne spp.) are a serious problem on these crops, rendering many farms unproductive. Currently, information on the Meloidogyne spp. occurring on most commonly cultivated cut foliage crops in Florida, and tools for their rapid identification are lacking. The objectives of this study were to (i) identify specific RKN infecting common ornamental cut foliage crops in Florida and (ii) evaluate the feasibility of using the mtDNA haplotype as a molecular diagnostic tool for rapid identification of large samples of RKN. A total of 200 Meloidogyne females were collected from cut foliage plant roots. Meloidogyne spp. were identified by PCR and RFLP of mitochondrial DNA. PCR and RFLP of mitochondrial DNA were effective in discriminating the Meloidogyne spp. present. Meloidogyne incognita is the most dominant RKN on cut foliage crops in Florida and must be a high target for making management decisions. Other Meloidogyne spp. identified include M. javanica, M. hapla, Meloidogyne sp. 1, and Meloidogyne sp. 2. The results for this study demonstrate the usefulness of the mtDNA haplotype-based designation as a valuable molecular tool for identification of Meloidogyne spp.

Entities:  

Keywords:  MORF/MTHIS; PCR-RFLP; TRNAH/MRH106; cut foliage; endonuclease; identification; mitochondrial haplotype; mtDNA; restriction enzymes

Year:  2016        PMID: 27765993      PMCID: PMC5070932          DOI: 10.21307/jofnem-2017-027

Source DB:  PubMed          Journal:  J Nematol        ISSN: 0022-300X            Impact factor:   1.402


  24 in total

Review 1.  Nematode molecular diagnostics: from bands to barcodes.

Authors:  Tom Powers
Journal:  Annu Rev Phytopathol       Date:  2004       Impact factor: 13.078

2.  Crosses prior to parthenogenesis explain the current genetic diversity of tropical plant-parasitic Meloidogyne species (Nematoda: Tylenchida).

Authors:  Mireille Fargette; Karine Berthier; Myriam Richaud; Virginie Lollier; Pierre Franck; Adan Hernandez; Roger Frutos
Journal:  Infect Genet Evol       Date:  2009-04-23       Impact factor: 3.342

3.  Incorporating Molecular Identification of Meloidogyne spp. into a Large-scale Regional Nematode Survey.

Authors:  T O Powers; P G Mullin; T S Harris; L A Sutton; R S Higgins
Journal:  J Nematol       Date:  2005-06       Impact factor: 1.402

4.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

5.  Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

Authors:  K Tamura; M Nei
Journal:  Mol Biol Evol       Date:  1993-05       Impact factor: 16.240

6.  Morphological and Molecular Characterization of Meloidogyne mayaguensis Isolates from Florida.

Authors:  J Brito; T O Powers; P G Mullin; R N Inserra; D W Dickson
Journal:  J Nematol       Date:  2004-09       Impact factor: 1.402

7.  Morphological, Molecular, and Differential-Host Characterization of Meloidogyne floridensis n. sp. (Nematoda: Meloidogynidae), a Root-Knot Nematode Parasitizing Peach in Florida.

Authors:  Z A Handoo; A P Nyczepir; D Esmenjaud; J G van der Beek; P Castagnone-Sereno; L K Carta; A M Skantar; J A Higgins
Journal:  J Nematol       Date:  2004-03       Impact factor: 1.402

8.  Ribosomal Intergenic Spacer: A Polymerase Chain Reaction Diagnostic for Meloidogyne chitwoodi, M. fallax, and M. hapla.

Authors:  J Wishart; M S Phillips; V C Blok
Journal:  Phytopathology       Date:  2002-08       Impact factor: 4.025

9.  Sensitive PCR Detection of Meloidogyne arenaria, M. incognita, and M. javanica Extracted from Soil.

Authors:  Jinya Jack Qiu; Becky B Westerdahl; Cindy Anderson; Valerie M Williamson
Journal:  J Nematol       Date:  2006-12       Impact factor: 1.402

10.  The complex hybrid origins of the root knot nematodes revealed through comparative genomics.

Authors:  David H Lunt; Sujai Kumar; Georgios Koutsovoulos; Mark L Blaxter
Journal:  PeerJ       Date:  2014-05-06       Impact factor: 2.984

View more
  3 in total

1.  First Report of the Root-Knot Nematode (Meloidogyne javanica) Infecting Hops (Humulus lupulus) in Florida, USA.

Authors:  J A Brito; S A Subbotin; J Desaeger; F Achinelly; S Qiu
Journal:  J Nematol       Date:  2018       Impact factor: 1.402

2.  A new root-knot nematode, Meloidogyne vitis sp. nov. (Nematoda: Meloidogynidae), parasitizing grape in Yunnan.

Authors:  Yanmei Yang; Xianqi Hu; Pei Liu; Li Chen; Huan Peng; Qiaomei Wang; Qi Zhang
Journal:  PLoS One       Date:  2021-02-03       Impact factor: 3.240

3.  Mist chamber extraction for improved diagnosis of Meloidogyne spp. from golf course bermudagrass.

Authors:  William T Crow; Alemayehu Habteweld; Thomas Bean
Journal:  J Nematol       Date:  2020-11-06       Impact factor: 1.402

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.