Literature DB >> 2775853

On the cooperative binding of large ligands to a one-dimensional homogeneous lattice: the generalized three-state lattice model.

W Bujalowski, T M Lohman, C F Anderson.   

Abstract

We present the general secular equation for three-state lattice models for the cooperative binding of large ligands to a one-dimensional lattice. In addition, a closed-form expression for the isotherm is also obtained, that can be used with all values of the cooperativity parameter omega(0 less than omega less than infinity) thus eliminating the need for multiple equations.

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Year:  1989        PMID： 2775853     DOI： 10.1002/bip.360280912

Source DB:  PubMed          Journal:  Biopolymers        ISSN： 0006-3525            Impact factor:   2.505


  23 in total

1.  Analytic binding isotherms describing competitive interactions of a protein ligand with specific and nonspecific sites on the same DNA oligomer.

Authors:  O V Tsodikov; J A Holbrook; I A Shkel; M T Record
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

2.  The Escherichia coli PriA helicase specifically recognizes gapped DNA substrates: effect of the two nucleotide-binding sites of the enzyme on the recognition process.

Authors:  Michal R Szymanski; Maria J Jezewska; Wlodzimierz Bujalowski
Journal:  J Biol Chem       Date:  2010-01-19       Impact factor: 5.157

3.  Functional characterization of the multidomain F plasmid TraI relaxase-helicase.

Authors:  Yuan Cheng; Dan E McNamara; Michael J Miley; Rebekah P Nash; Matthew R Redinbo
Journal:  J Biol Chem       Date:  2011-02-02       Impact factor: 5.157

4.  The N-terminal domain of the Escherichia coli PriA helicase contains both the DNA- and nucleotide-binding sites. Energetics of domain--DNA interactions and allosteric effect of the nucleotide cofactors.

Authors:  Michal R Szymanski; Paul J Bujalowski; Maria J Jezewska; Aleksandra M Gmyrek; Wlodzimierz Bujalowski
Journal:  Biochemistry       Date:  2011-10-07       Impact factor: 3.162

5.  Interactions of the DNA polymerase X from African Swine Fever Virus with the ssDNA. Properties of the total DNA-binding site and the strong DNA-binding subsite.

Authors:  Maria J Jezewska; Michal R Szymanski; Wlodzimierz Bujalowski
Journal:  Biophys Chem       Date:  2011-04-28       Impact factor: 2.352

6.  Full-length Dengue virus RNA-dependent RNA polymerase-RNA/DNA complexes: stoichiometries, intrinsic affinities, cooperativities, base, and conformational specificities.

Authors:  Michal R Szymanski; Maria J Jezewska; Paul J Bujalowski; Cecile Bussetta; Mengyi Ye; Kyung H Choi; Wlodzimierz Bujalowski
Journal:  J Biol Chem       Date:  2011-07-02       Impact factor: 5.157

7.  Glutamate promotes SSB protein-protein Interactions via intrinsically disordered regions.

Authors:  Alexander G Kozlov; Min Kyung Shinn; Elizabeth A Weiland; Timothy M Lohman
Journal:  J Mol Biol       Date:  2017-08-03       Impact factor: 5.469

8.  Thermodynamic analysis of the structure-function relationship in the total DNA-binding site of enzyme-DNA complexes.

Authors:  Wlodzimierz Bujalowski; Maria J Jezewska
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

Review 9.  SSB-DNA binding monitored by fluorescence intensity and anisotropy.

Authors:  Alexander G Kozlov; Roberto Galletto; Timothy M Lohman
Journal:  Methods Mol Biol       Date:  2012

10.  Dynamics of the ssDNA recognition by the RepA hexameric helicase of plasmid RSF1010: analyses using fluorescence stopped-flow intensity and anisotropy methods.

Authors:  Iraida E Andreeva; Michal R Szymanski; Maria J Jezewska; Roberto Galletto; Wlodzimierz Bujalowski
Journal:  J Mol Biol       Date:  2009-03-14       Impact factor: 5.469
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