Literature DB >> 27756844

Electrostatic and Structural Bases of Fe2+ Translocation through Ferritin Channels.

Balasubramanian Chandramouli1,2, Caterina Bernacchioni3, Danilo Di Maio4,2, Paola Turano3, Giuseppe Brancato5,2.   

Abstract

Ferritin molecular cages are marvelous 24-mer supramolecular architectures that enable massive iron storage (>2000 iron atoms) within their inner cavity. This cavity is connected to the outer environment by two channels at C3 and C4 symmetry axes of the assembly. Ferritins can also be exploited as carriers for in vivo imaging and therapeutic applications, owing to their capability to effectively protect synthetic non-endogenous agents within the cage cavity and deliver them to targeted tissue cells without stimulating adverse immune responses. Recently, X-ray crystal structures of Fe2+-loaded ferritins provided important information on the pathways followed by iron ions toward the ferritin cavity and the catalytic centers within the protein. However, the specific mechanisms enabling Fe2+ uptake through wild-type and mutant ferritin channels is largely unknown. To shed light on this question, we report extensive molecular dynamics simulations, site-directed mutagenesis, and kinetic measurements that characterize the transport properties and translocation mechanism of Fe2+ through the two ferritin channels, using the wild-type bullfrog Rana catesbeiana H' protein and some of its variants as case studies. We describe the structural features that determine Fe2+ translocation with atomistic detail, and we propose a putative mechanism for Fe2+ transport through the channel at the C3 symmetry axis, which is the only iron-permeable channel in vertebrate ferritins. Our findings have important implications for understanding how ion permeation occurs, and further how it may be controlled via purposely engineered channels for novel biomedical applications based on ferritin.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  ferritin; ferritin channels; ion channel; iron; iron uptake; molecular dynamics; multi-ion mechanism; structure; translocation

Mesh:

Substances:

Year:  2016        PMID: 27756844      PMCID: PMC5207259          DOI: 10.1074/jbc.M116.748046

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  38 in total

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Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

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Review 4.  Engineering light-gated ion channels.

Authors:  Matthew R Banghart; Matthew Volgraf; Dirk Trauner
Journal:  Biochemistry       Date:  2006-12-02       Impact factor: 3.162

5.  Comparison of multiple Amber force fields and development of improved protein backbone parameters.

Authors:  Viktor Hornak; Robert Abel; Asim Okur; Bentley Strockbine; Adrian Roitberg; Carlos Simmerling
Journal:  Proteins       Date:  2006-11-15

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Authors:  O S Smart; J G Neduvelil; X Wang; B A Wallace; M S Sansom
Journal:  J Mol Graph       Date:  1996-12

Review 7.  Unity in the biochemistry of the iron-storage proteins ferritin and bacterioferritin.

Authors:  Kourosh Honarmand Ebrahimi; Peter-Leon Hagedoorn; Wilfred R Hagen
Journal:  Chem Rev       Date:  2014-11-24       Impact factor: 60.622

Review 8.  Ferritin: a versatile building block for bionanotechnology.

Authors:  Günther Jutz; Patrick van Rijn; Barbara Santos Miranda; Alexander Böker
Journal:  Chem Rev       Date:  2015-02-16       Impact factor: 60.622

9.  MDAnalysis: a toolkit for the analysis of molecular dynamics simulations.

Authors:  Naveen Michaud-Agrawal; Elizabeth J Denning; Thomas B Woolf; Oliver Beckstein
Journal:  J Comput Chem       Date:  2011-04-15       Impact factor: 3.376

10.  Ferroxidase Activity in Eukaryotic Ferritin is Controlled by Accessory-Iron-Binding Sites in the Catalytic Cavity.

Authors:  Caterina Bernacchioni; Cecilia Pozzi; Flavio Di Pisa; Stefano Mangani; Paola Turano
Journal:  Chemistry       Date:  2016-09-21       Impact factor: 5.236

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  5 in total

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Journal:  J Biol Inorg Chem       Date:  2021-02-17       Impact factor: 3.358

2.  Structural comparison of two ferritins from the marine invertebrate Phascolosoma esculenta.

Authors:  Tinghong Ming; Hengshang Huan; Chang Su; Chunheng Huo; Yan Wu; Qinqin Jiang; Xiaoting Qiu; Chenyang Lu; Jun Zhou; Ye Li; Xiurong Su
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4.  Structural Insights Into the Effects of Interactions With Iron and Copper Ions on Ferritin From the Blood Clam Tegillarca granosa.

Authors:  Tinghong Ming; Qinqin Jiang; Chunheng Huo; Hengshang Huan; Yan Wu; Chang Su; Xiaoting Qiu; Chenyang Lu; Jun Zhou; Ye Li; Jiaojiao Han; Zhen Zhang; Xiurong Su
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5.  Chanalyzer: A Computational Geometry Approach for the Analysis of Protein Channel Shape and Dynamics.

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Journal:  Front Mol Biosci       Date:  2022-07-25
  5 in total

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