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Literature DB >> 27755531

Protein dynamics: Conformational footprints.

Buyong Ma¹, Ruth Nussinov¹.

Abstract

Entities: Chemical Disease Gene Mutation

Mesh：

Year: 2016 PMID： 27755531 PMCID： PMC6361525 DOI： 10.1038/nchembio.2212

Source DB: PubMed Journal: Nat Chem Biol ISSN： 1552-4450 Impact factor: 15.040

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10 in total

1. A second molecular biology revolution? The energy landscapes of biomolecular function.

Authors: Ruth Nussinov; Peter G Wolynes
Journal: Phys Chem Chem Phys Date: 2014-03-10 Impact factor: 3.676

2. Exploring the Free Energy Landscape of Nucleosomes.

Authors: Bin Zhang; Weihua Zheng; Garegin A Papoian; Peter G Wolynes
Journal: J Am Chem Soc Date: 2016-06-27 Impact factor: 15.419

3. The role of protein dynamics in the evolution of new enzyme function.

Authors: Eleanor Campbell; Miriam Kaltenbach; Galen J Correy; Paul D Carr; Benjamin T Porebski; Emma K Livingstone; Livnat Afriat-Jurnou; Ashley M Buckle; Martin Weik; Florian Hollfelder; Nobuhiko Tokuriki; Colin J Jackson
Journal: Nat Chem Biol Date: 2016-09-12 Impact factor: 15.040

4. Allosteric effects of the oncogenic RasQ61L mutant on Raf-RBD.

Authors: Susan K Fetics; Hugo Guterres; Bradley M Kearney; Greg Buhrman; Buyong Ma; Ruth Nussinov; Carla Mattos
Journal: Structure Date: 2015-02-12 Impact factor: 5.006

5. Evolution of a Protein Interaction Domain Family by Tuning Conformational Flexibility.

Authors: Dustin S Whitney; Brian F Volkman; Kenneth E Prehoda
Journal: J Am Chem Soc Date: 2016-08-25 Impact factor: 15.419

6. Activation of the A2A adenosine G-protein-coupled receptor by conformational selection.

Authors: Libin Ye; Ned Van Eps; Marco Zimmer; Oliver P Ernst; R Scott Prosser
Journal: Nature Date: 2016-05-04 Impact factor: 49.962

Review 7. Protein Ensembles: How Does Nature Harness Thermodynamic Fluctuations for Life? The Diverse Functional Roles of Conformational Ensembles in the Cell.

Authors: Guanghong Wei; Wenhui Xi; Ruth Nussinov; Buyong Ma
Journal: Chem Rev Date: 2016-01-25 Impact factor: 60.622

8. Free energy landscape of activation in a signalling protein at atomic resolution.

Authors: F Pontiggia; D V Pachov; M W Clarkson; J Villali; M F Hagan; V S Pande; D Kern
Journal: Nat Commun Date: 2015-06-15 Impact factor: 14.919

9. Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography.

Authors: Daniel A Keedy; Lillian R Kenner; Matthew Warkentin; Rahel A Woldeyes; Jesse B Hopkins; Michael C Thompson; Aaron S Brewster; Andrew H Van Benschoten; Elizabeth L Baxter; Monarin Uervirojnangkoorn; Scott E McPhillips; Jinhu Song; Roberto Alonso-Mori; James M Holton; William I Weis; Axel T Brunger; S Michael Soltis; Henrik Lemke; Ana Gonzalez; Nicholas K Sauter; Aina E Cohen; Henry van den Bedem; Robert E Thorne; James S Fraser
Journal: Elife Date: 2015-09-30 Impact factor: 8.140

10. Energy Landscape Topography Reveals the Underlying Link Between Binding Specificity and Activity of Enzymes.

Authors: Wen-Ting Chu; Jin Wang
Journal: Sci Rep Date: 2016-06-14 Impact factor: 4.379

10 in total

12 in total

1. The Allosteric Effect in Antibody-Antigen Recognition.

Authors: Jun Zhao; Ruth Nussinov; Buyong Ma
Journal: Methods Mol Biol Date: 2021

2. Homology modeling in a dynamical world.

Authors: Alexander Miguel Monzon; Diego Javier Zea; Cristina Marino-Buslje; Gustavo Parisi
Journal: Protein Sci Date: 2017-09-28 Impact factor: 6.725

3. Free energy landscape remodeling of the cardiac pacemaker channel explains the molecular basis of familial sinus bradycardia.

Authors: Stephen Boulton; Madoka Akimoto; Sam Akbarizadeh; Giuseppe Melacini
Journal: J Biol Chem Date: 2017-02-07 Impact factor: 5.157

Protein dynamics: Conformational footprints.

1. A second molecular biology revolution? The energy landscapes of biomolecular function.

2. Exploring the Free Energy Landscape of Nucleosomes.

3. The role of protein dynamics in the evolution of new enzyme function.

4. Allosteric effects of the oncogenic RasQ61L mutant on Raf-RBD.

5. Evolution of a Protein Interaction Domain Family by Tuning Conformational Flexibility.

6. Activation of the A2A adenosine G-protein-coupled receptor by conformational selection.

Review 7. Protein Ensembles: How Does Nature Harness Thermodynamic Fluctuations for Life? The Diverse Functional Roles of Conformational Ensembles in the Cell.

8. Free energy landscape of activation in a signalling protein at atomic resolution.

9. Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography.

10. Energy Landscape Topography Reveals the Underlying Link Between Binding Specificity and Activity of Enzymes.

1. The Allosteric Effect in Antibody-Antigen Recognition.

2. Homology modeling in a dynamical world.

3. Free energy landscape remodeling of the cardiac pacemaker channel explains the molecular basis of familial sinus bradycardia.

4. Role of Conformational Dynamics in the Evolution of Retro-Aldolase Activity.

5. Solution conformations of Zika NS2B-NS3pro and its inhibition by natural products from edible plants.

Review 6. Role of conformational dynamics in the evolution of novel enzyme function.

7. Tunable microsecond dynamics of an allosteric switch regulate the activity of a AAA+ disaggregation machine.

8. Deciphering evolution of immune recognition in antibodies.

9. Mechanism of allosteric activation of SIRT6 revealed by the action of rationally designed activators.

10. Rescue of conformational dynamics in enzyme catalysis by directed evolution.