Literature DB >> 27749058

Synergies Between Quantum Mechanics and Machine Learning in Reaction Prediction.

Peter Sadowski1, David Fooshee1, Niranjan Subrahmanya2, Pierre Baldi1.   

Abstract

Machine learning (ML) and quantum mechanical (QM) methods can be used in two-way synergy to build chemical reaction expert systems. The proposed ML approach identifies electron sources and sinks among reactants and then ranks all source-sink pairs. This addresses a bottleneck of QM calculations by providing a prioritized list of mechanistic reaction steps. QM modeling can then be used to compute the transition states and activation energies of the top-ranked reactions, providing additional or improved examples of ranked source-sink pairs. Retraining the ML model closes the loop, producing more accurate predictions from a larger training set. The approach is demonstrated in detail using a small set of organic radical reactions.

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Year:  2016        PMID: 27749058     DOI: 10.1021/acs.jcim.6b00351

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  5 in total

1.  Systematic Studies on the Protocol and Criteria for Selecting a Covalent Docking Tool.

Authors:  Chang Wen; Xin Yan; Qiong Gu; Jiewen Du; Di Wu; Yutong Lu; Huihao Zhou; Jun Xu
Journal:  Molecules       Date:  2019-06-10       Impact factor: 4.411

Review 2.  Deep Learning for Deep Chemistry: Optimizing the Prediction of Chemical Patterns.

Authors:  Tânia F G G Cova; Alberto A C C Pais
Journal:  Front Chem       Date:  2019-11-26       Impact factor: 5.221

3.  Machine learning dihydrogen activation in the chemical space surrounding Vaska's complex.

Authors:  Pascal Friederich; Gabriel Dos Passos Gomes; Riccardo De Bin; Alán Aspuru-Guzik; David Balcells
Journal:  Chem Sci       Date:  2020-04-07       Impact factor: 9.825

4.  tmQM Dataset-Quantum Geometries and Properties of 86k Transition Metal Complexes.

Authors:  David Balcells; Bastian Bjerkem Skjelstad
Journal:  J Chem Inf Model       Date:  2020-11-09       Impact factor: 4.956

Review 5.  Artificial Intelligence in Drug Design.

Authors:  Gerhard Hessler; Karl-Heinz Baringhaus
Journal:  Molecules       Date:  2018-10-02       Impact factor: 4.411

  5 in total

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