| Literature DB >> 27746945 |
Sevim Hamamci Alisir1, Necmi Dege2.
Abstract
In the title mixed-ligand silver(I) coordination polymeric complex with the non-steroidal anti-inflammatory drug diclofenac (C14H11Cl2NO2) (diclH) and pyrimidine (pym), namely poly[{μ2-2-[2-(2,6-di-chloro-anilino)phen-yl]acetato-κ2O:O'}(μ2-pyrimidine-κ2N1:N3)silver(I)], [Ag(C14H10Cl2NO2)(C4H4N2)] n or [Ag(μ-dicl)(μ-pym)] n , the very distorted tetra-hedral AgN2O2 coordination centres comprise two N-atom donors from bridging pym ligands [Ag-N = 2.381 (3) and 2.412 (3) Å] and two carboxyl-ate O-atom donors from dicl ligands [Ag-O = 2.279 (2) and 2.280 (2) Å], which bridge Ag atoms, giving a centrosymmetric dinuclear units with a short Ag⋯Ag separation [2.8931 (5) Å]. Within the units are short intra-ligand C-Cl⋯π(pym) inter-actions [3.6409 (15) Å]. The units are linked through the bridging N atoms of the pym ligand into a two-dimensional sheet-polymer structure lying parallel to (100) and stabilized by inter-ring π-π inter-actions between the pym ligands [Cg⋯Cg = 3.4199 (17) Å]. Additional inter-unit C-H⋯O and C-H⋯Cg hydrogen-bonding inter-actions between the sheets give an overall three-dimensional structure.Entities:
Keywords: crystal structure; diclofenac; non-steroidal anti-inflammatory drug; silver(I) complex; two-dimensional coordination polymer
Year: 2016 PMID: 27746945 PMCID: PMC5050780 DOI: 10.1107/S2056989016014730
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular configuration and atom-labelling scheme for the title complex, (I), with displacement ellipsoids drawn at the 30% level. For symmetry codes (i) and (ii), see Table 1 ▸.
Selected geometric parameters (Å, °)
| Ag1—O2 | 2.279 (2) | Ag1—N3ii | 2.412 (3) |
| Ag1—O1i | 2.280 (2) | Ag1—Ag1i | 2.8931 (5) |
| Ag1—N2 | 2.381 (3) | ||
| O2—Ag1—O1i | 148.04 (10) | O2—Ag1—Ag1i | 81.70 (6) |
| O2—Ag1—N2 | 99.71 (8) | O1i—Ag1—Ag1i | 76.19 (6) |
| O1i—Ag1—N2 | 89.58 (8) | N2—Ag1—Ag1i | 151.80 (6) |
| O1i—Ag1—N3ii | 108.69 (9) | N3ii—Ag1—Ag1i | 99.73 (6) |
| N2—Ag1—N3ii | 107.93 (9) |
Symmetry codes: (i) ; (ii) .
Figure 2A view of the centrosymmetric caboxylate-bridged dinuclear [Ag2(μ-dicl)2] unit in (I). H atoms have been omitted.
Figure 3A partial expansion of the dinuclear unit in (I) through the pym ligands, also showing the pym⋯pym π–π ring interactions.
Figure 4The layered structure of (I). H atoms and part of the dicl ligands have been omitted.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O2 | 0.86 | 2.43 | 2.971 (3) | 122 |
| C16—H16⋯O1iii | 0.93 | 2.51 | 3.248 (4) | 136 |
| C13—H13 | 0.97 | 3.30 | 3.983 (3) | 129 |
Symmetry codes: (iii) ; (iv) .
Figure 5The packing of (I) in the unit cell viewed along the b axis.
Selected comparative IR spectral data for Nadicl and the dicl ligand in (I)
Frequencies in cm−1; w, weak; m, medium; s, strong; vs, very strong. Nadicl = sodium 2-(2,6-dichloroanilino)phenylacetate.
| Assignment | Nadicl | (I) | |
|---|---|---|---|
| ν(NH) | 3250 ( | 3307 ( | |
| νar(CH) | 3060 ( | 3064–3029 ( | |
| νal(CH) | 2980 ( | 2956–2890 ( | |
| νas(COO) | 1572 ( | 1548 ( | |
| νs(COO) | 1399 ( | 1365 ( | |
| ν(CCl) | 768 ( | 768 ( |
Experimental details
| Crystal data | |
| Chemical formula | [Ag(C14H10Cl2NO2)(C4H4N2)] |
|
| 483.09 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 18.5886 (4), 9.3071 (4), 10.6646 (8) |
| β (°) | 105.644 (3) |
|
| 1776.69 (16) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 1.45 |
| Crystal size (mm) | 0.60 × 0.46 × 0.27 |
| Data collection | |
| Diffractometer | Stoe |
| Absorption correction | Integration ( |
|
| 0.471, 0.693 |
| No. of measured, independent and observed [ | 13090, 4538, 3672 |
|
| 0.088 |
| (sin θ/λ)max (Å−1) | 0.675 |
| Refinement | |
|
| 0.039, 0.095, 1.04 |
| No. of reflections | 4538 |
| No. of parameters | 236 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.57, −1.14 |
Computer programs: X-AREA and X-RED32 (Stoe & Cie, 2002 ▸), SHELXS97 (Sheldrick, 2008 ▸) within WinGX (Farrugia, 2012 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and SHELXTL (Sheldrick, 2008 ▸).
| [Ag(C14H10Cl2NO2)(C4H4N2)] | |
| Monoclinic, | Mo |
| Cell parameters from 13681 reflections | |
| θ = 2.0–29.1° | |
| µ = 1.45 mm−1 | |
| β = 105.644 (3)° | |
| Prism, colorless | |
| 0.60 × 0.46 × 0.27 mm |
| Stoe IPDS2 diffractometer | 3672 reflections with |
| ω–scan rotation method | |
| Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | θmax = 28.7°, θmin = 2.3° |
| 13090 measured reflections | |
| 4538 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.57 e Å−3 | |
| 4538 reflections | Δρmin = −1.14 e Å−3 |
| 236 parameters | Extinction correction: SHELXL2014 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.0206 (11) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.17222 (14) | 0.3200 (3) | 0.6246 (3) | 0.0419 (6) | |
| C2 | 0.12206 (16) | 0.2364 (3) | 0.5353 (3) | 0.0496 (7) | |
| H2 | 0.1387 | 0.1695 | 0.4847 | 0.060* | |
| C3 | 0.04629 (16) | 0.2541 (4) | 0.5223 (4) | 0.0546 (8) | |
| H3 | 0.0116 | 0.2009 | 0.4607 | 0.065* | |
| C4 | 0.02263 (15) | 0.3495 (4) | 0.5995 (3) | 0.0505 (7) | |
| H4 | −0.0282 | 0.3603 | 0.5912 | 0.061* | |
| C5 | 0.07381 (14) | 0.4302 (3) | 0.6904 (3) | 0.0406 (6) | |
| C6 | 0.15110 (13) | 0.4220 (3) | 0.7029 (3) | 0.0381 (5) | |
| C7 | 0.19762 (12) | 0.6542 (3) | 0.8068 (3) | 0.0377 (5) | |
| C8 | 0.15520 (14) | 0.7377 (3) | 0.7067 (3) | 0.0451 (6) | |
| H8 | 0.1312 | 0.6953 | 0.6275 | 0.054* | |
| C9 | 0.14820 (16) | 0.8839 (4) | 0.7235 (4) | 0.0529 (8) | |
| H9 | 0.1197 | 0.9397 | 0.6558 | 0.063* | |
| C10 | 0.18355 (17) | 0.9463 (3) | 0.8408 (4) | 0.0573 (9) | |
| H10 | 0.1785 | 1.0443 | 0.8535 | 0.069* | |
| C11 | 0.22657 (15) | 0.8624 (3) | 0.9396 (4) | 0.0501 (7) | |
| H11 | 0.2502 | 0.9054 | 1.0187 | 0.060* | |
| C12 | 0.23575 (12) | 0.7165 (3) | 0.9249 (3) | 0.0391 (6) | |
| C13 | 0.28437 (13) | 0.6294 (4) | 1.0340 (3) | 0.0437 (6) | |
| H13A | 0.2575 | 0.5429 | 1.0448 | 0.052* | |
| H13B | 0.2930 | 0.6843 | 1.1140 | 0.052* | |
| C14 | 0.36042 (13) | 0.5857 (3) | 1.0147 (3) | 0.0367 (5) | |
| C15 | 0.44153 (16) | 0.3069 (3) | 0.5812 (3) | 0.0444 (6) | |
| H15 | 0.4577 | 0.2251 | 0.6310 | 0.053* | |
| C16 | 0.40626 (15) | 0.4123 (3) | 0.3828 (3) | 0.0461 (6) | |
| H16 | 0.3968 | 0.4080 | 0.2926 | 0.055* | |
| C17 | 0.39630 (16) | 0.5399 (4) | 0.4394 (3) | 0.0489 (7) | |
| H17 | 0.3807 | 0.6220 | 0.3899 | 0.059* | |
| C18 | 0.41040 (15) | 0.5417 (3) | 0.5740 (3) | 0.0461 (6) | |
| H18 | 0.4038 | 0.6266 | 0.6154 | 0.055* | |
| Ag1 | 0.46373 (2) | 0.43353 (3) | 0.87652 (2) | 0.04354 (10) | |
| Cl1 | 0.26694 (4) | 0.29612 (9) | 0.63922 (10) | 0.0610 (2) | |
| Cl2 | 0.03984 (4) | 0.54045 (9) | 0.79226 (9) | 0.05280 (19) | |
| N1 | 0.20327 (12) | 0.5025 (3) | 0.7931 (3) | 0.0443 (5) | |
| H1 | 0.2409 | 0.4588 | 0.8434 | 0.053* | |
| N2 | 0.43318 (12) | 0.4245 (3) | 0.6450 (2) | 0.0425 (5) | |
| N3 | 0.42916 (13) | 0.2935 (3) | 0.4527 (2) | 0.0457 (5) | |
| O1 | 0.41252 (11) | 0.5735 (3) | 1.1157 (2) | 0.0586 (6) | |
| O2 | 0.36494 (11) | 0.5641 (3) | 0.9022 (2) | 0.0590 (6) |
| C1 | 0.0374 (11) | 0.0372 (13) | 0.0497 (15) | 0.0009 (10) | 0.0092 (11) | 0.0018 (13) |
| C2 | 0.0522 (15) | 0.0425 (15) | 0.0518 (17) | −0.0023 (12) | 0.0097 (13) | −0.0065 (14) |
| C3 | 0.0458 (14) | 0.0469 (16) | 0.063 (2) | −0.0076 (12) | 0.0001 (13) | −0.0057 (16) |
| C4 | 0.0350 (12) | 0.0496 (17) | 0.062 (2) | −0.0056 (11) | 0.0045 (12) | 0.0027 (15) |
| C5 | 0.0362 (11) | 0.0378 (13) | 0.0472 (15) | 0.0012 (10) | 0.0104 (11) | 0.0046 (12) |
| C6 | 0.0341 (10) | 0.0344 (12) | 0.0430 (14) | 0.0025 (9) | 0.0055 (10) | 0.0047 (11) |
| C7 | 0.0293 (10) | 0.0376 (13) | 0.0472 (14) | 0.0020 (9) | 0.0119 (10) | 0.0004 (12) |
| C8 | 0.0339 (11) | 0.0495 (15) | 0.0504 (16) | 0.0006 (11) | 0.0090 (11) | 0.0030 (14) |
| C9 | 0.0402 (13) | 0.0480 (16) | 0.072 (2) | 0.0062 (12) | 0.0182 (14) | 0.0166 (17) |
| C10 | 0.0468 (15) | 0.0384 (15) | 0.089 (3) | 0.0036 (12) | 0.0230 (16) | −0.0026 (17) |
| C11 | 0.0383 (12) | 0.0468 (16) | 0.067 (2) | −0.0010 (11) | 0.0167 (13) | −0.0129 (15) |
| C12 | 0.0267 (10) | 0.0422 (14) | 0.0502 (15) | 0.0005 (9) | 0.0135 (10) | −0.0046 (12) |
| C13 | 0.0319 (11) | 0.0561 (17) | 0.0432 (15) | 0.0005 (11) | 0.0102 (10) | −0.0061 (14) |
| C14 | 0.0303 (10) | 0.0338 (12) | 0.0445 (14) | 0.0008 (9) | 0.0074 (10) | −0.0019 (11) |
| C15 | 0.0539 (14) | 0.0419 (14) | 0.0395 (14) | 0.0020 (12) | 0.0159 (12) | 0.0026 (13) |
| C16 | 0.0441 (13) | 0.0577 (18) | 0.0356 (13) | −0.0024 (12) | 0.0094 (11) | 0.0018 (13) |
| C17 | 0.0451 (13) | 0.0503 (16) | 0.0493 (16) | 0.0086 (12) | 0.0096 (12) | 0.0110 (14) |
| C18 | 0.0404 (12) | 0.0432 (15) | 0.0522 (17) | 0.0056 (11) | 0.0084 (12) | −0.0035 (13) |
| Ag1 | 0.04020 (13) | 0.05477 (15) | 0.03712 (13) | 0.00513 (8) | 0.01297 (8) | −0.00042 (10) |
| Cl1 | 0.0401 (3) | 0.0555 (4) | 0.0877 (6) | 0.0068 (3) | 0.0176 (3) | −0.0087 (5) |
| Cl2 | 0.0458 (3) | 0.0534 (4) | 0.0647 (5) | 0.0013 (3) | 0.0243 (3) | −0.0020 (4) |
| N1 | 0.0344 (10) | 0.0402 (12) | 0.0504 (14) | 0.0065 (9) | −0.0019 (9) | −0.0026 (11) |
| N2 | 0.0401 (10) | 0.0500 (14) | 0.0375 (11) | 0.0031 (9) | 0.0104 (9) | −0.0026 (11) |
| N3 | 0.0534 (13) | 0.0460 (13) | 0.0392 (12) | −0.0014 (10) | 0.0149 (10) | −0.0015 (11) |
| O1 | 0.0334 (9) | 0.0967 (19) | 0.0426 (11) | 0.0109 (10) | 0.0049 (8) | 0.0071 (12) |
| O2 | 0.0412 (10) | 0.0880 (18) | 0.0456 (12) | 0.0186 (10) | 0.0080 (9) | −0.0133 (12) |
| C1—C2 | 1.379 (4) | C12—C13 | 1.504 (4) |
| C1—C6 | 1.390 (4) | C13—C14 | 1.537 (3) |
| C1—Cl1 | 1.739 (3) | C13—H13A | 0.9700 |
| C2—C3 | 1.387 (4) | C13—H13B | 0.9700 |
| C2—H2 | 0.9300 | C14—O2 | 1.242 (4) |
| C3—C4 | 1.362 (5) | C14—O1 | 1.244 (3) |
| C3—H3 | 0.9300 | C15—N2 | 1.320 (4) |
| C4—C5 | 1.382 (4) | C15—N3 | 1.333 (4) |
| C4—H4 | 0.9300 | C15—H15 | 0.9300 |
| C5—C6 | 1.409 (3) | C16—N3 | 1.338 (4) |
| C5—Cl2 | 1.733 (3) | C16—C17 | 1.367 (5) |
| C6—N1 | 1.387 (3) | C16—H16 | 0.9300 |
| C7—C8 | 1.382 (4) | C17—C18 | 1.388 (5) |
| C7—C12 | 1.394 (4) | C17—H17 | 0.9300 |
| C7—N1 | 1.426 (4) | C18—N2 | 1.330 (4) |
| C8—C9 | 1.383 (5) | C18—H18 | 0.9300 |
| C8—H8 | 0.9300 | Ag1—O2 | 2.279 (2) |
| C9—C10 | 1.375 (6) | Ag1—O1i | 2.280 (2) |
| C9—H9 | 0.9300 | Ag1—N2 | 2.381 (3) |
| C10—C11 | 1.380 (5) | Ag1—N3ii | 2.412 (3) |
| C10—H10 | 0.9300 | Ag1—Ag1i | 2.8931 (5) |
| C11—C12 | 1.383 (4) | N1—H1 | 0.8600 |
| C11—H11 | 0.9300 | ||
| C2—C1—C6 | 123.5 (2) | C12—C13—H13B | 108.5 |
| C2—C1—Cl1 | 118.0 (2) | C14—C13—H13B | 108.5 |
| C6—C1—Cl1 | 118.5 (2) | H13A—C13—H13B | 107.5 |
| C1—C2—C3 | 118.8 (3) | O2—C14—O1 | 125.6 (2) |
| C1—C2—H2 | 120.6 | O2—C14—C13 | 118.5 (2) |
| C3—C2—H2 | 120.6 | O1—C14—C13 | 115.9 (3) |
| C4—C3—C2 | 120.1 (3) | N2—C15—N3 | 126.6 (3) |
| C4—C3—H3 | 119.9 | N2—C15—H15 | 116.7 |
| C2—C3—H3 | 119.9 | N3—C15—H15 | 116.7 |
| C3—C4—C5 | 120.3 (3) | N3—C16—C17 | 122.1 (3) |
| C3—C4—H4 | 119.9 | N3—C16—H16 | 118.9 |
| C5—C4—H4 | 119.9 | C17—C16—H16 | 118.9 |
| C4—C5—C6 | 122.0 (3) | C16—C17—C18 | 117.2 (3) |
| C4—C5—Cl2 | 117.6 (2) | C16—C17—H17 | 121.4 |
| C6—C5—Cl2 | 120.5 (2) | C18—C17—H17 | 121.4 |
| N1—C6—C1 | 121.9 (2) | N2—C18—C17 | 121.4 (3) |
| N1—C6—C5 | 122.8 (3) | N2—C18—H18 | 119.3 |
| C1—C6—C5 | 115.2 (2) | C17—C18—H18 | 119.3 |
| C8—C7—C12 | 120.6 (3) | O2—Ag1—O1i | 148.04 (10) |
| C8—C7—N1 | 121.4 (3) | O2—Ag1—N2 | 99.71 (8) |
| C12—C7—N1 | 118.1 (2) | O1i—Ag1—N2 | 89.58 (8) |
| C7—C8—C9 | 120.5 (3) | O2—Ag1—N3ii | 97.48 (9) |
| C7—C8—H8 | 119.8 | O1i—Ag1—N3ii | 108.69 (9) |
| C9—C8—H8 | 119.8 | N2—Ag1—N3ii | 107.93 (9) |
| C10—C9—C8 | 119.7 (3) | O2—Ag1—Ag1i | 81.70 (6) |
| C10—C9—H9 | 120.2 | O1i—Ag1—Ag1i | 76.19 (6) |
| C8—C9—H9 | 120.2 | N2—Ag1—Ag1i | 151.80 (6) |
| C9—C10—C11 | 119.4 (3) | N3ii—Ag1—Ag1i | 99.73 (6) |
| C9—C10—H10 | 120.3 | C6—N1—C7 | 123.3 (2) |
| C11—C10—H10 | 120.3 | C6—N1—H1 | 118.4 |
| C10—C11—C12 | 122.2 (3) | C7—N1—H1 | 118.4 |
| C10—C11—H11 | 118.9 | C15—N2—C18 | 116.7 (3) |
| C12—C11—H11 | 118.9 | C15—N2—Ag1 | 122.4 (2) |
| C11—C12—C7 | 117.6 (3) | C18—N2—Ag1 | 120.8 (2) |
| C11—C12—C13 | 120.6 (3) | C15—N3—C16 | 115.9 (3) |
| C7—C12—C13 | 121.9 (2) | C15—N3—Ag1iii | 116.2 (2) |
| C12—C13—C14 | 114.9 (2) | C16—N3—Ag1iii | 127.6 (2) |
| C12—C13—H13A | 108.5 | C14—O1—Ag1i | 125.2 (2) |
| C14—C13—H13A | 108.5 | C14—O2—Ag1 | 117.96 (17) |
| C6—C1—C2—C3 | −0.1 (5) | N1—C7—C12—C13 | 2.6 (4) |
| Cl1—C1—C2—C3 | −180.0 (3) | C11—C12—C13—C14 | −105.3 (3) |
| C1—C2—C3—C4 | −2.0 (5) | C7—C12—C13—C14 | 75.6 (3) |
| C2—C3—C4—C5 | 0.7 (5) | C12—C13—C14—O2 | −31.7 (4) |
| C3—C4—C5—C6 | 2.7 (5) | C12—C13—C14—O1 | 149.1 (3) |
| C3—C4—C5—Cl2 | −175.9 (3) | N3—C16—C17—C18 | −0.5 (4) |
| C2—C1—C6—N1 | 179.0 (3) | C16—C17—C18—N2 | 0.5 (4) |
| Cl1—C1—C6—N1 | −1.2 (4) | C1—C6—N1—C7 | 133.5 (3) |
| C2—C1—C6—C5 | 3.2 (4) | C5—C6—N1—C7 | −51.1 (4) |
| Cl1—C1—C6—C5 | −176.9 (2) | C8—C7—N1—C6 | −21.6 (4) |
| C4—C5—C6—N1 | 179.8 (3) | C12—C7—N1—C6 | 157.8 (3) |
| Cl2—C5—C6—N1 | −1.6 (4) | N3—C15—N2—C18 | −0.3 (4) |
| C4—C5—C6—C1 | −4.5 (4) | N3—C15—N2—Ag1 | −176.8 (2) |
| Cl2—C5—C6—C1 | 174.0 (2) | C17—C18—N2—C15 | −0.1 (4) |
| C12—C7—C8—C9 | −1.8 (4) | C17—C18—N2—Ag1 | 176.4 (2) |
| N1—C7—C8—C9 | 177.6 (3) | N2—C15—N3—C16 | 0.3 (4) |
| C7—C8—C9—C10 | −0.2 (4) | N2—C15—N3—Ag1iii | 173.7 (2) |
| C8—C9—C10—C11 | 1.0 (5) | C17—C16—N3—C15 | 0.2 (4) |
| C9—C10—C11—C12 | 0.2 (5) | C17—C16—N3—Ag1iii | −172.4 (2) |
| C10—C11—C12—C7 | −2.1 (4) | O2—C14—O1—Ag1i | 17.1 (4) |
| C10—C11—C12—C13 | 178.7 (3) | C13—C14—O1—Ag1i | −163.8 (2) |
| C8—C7—C12—C11 | 3.0 (4) | O1—C14—O2—Ag1 | 18.3 (4) |
| N1—C7—C12—C11 | −176.5 (2) | C13—C14—O2—Ag1 | −160.8 (2) |
| C8—C7—C12—C13 | −177.9 (2) |
| H··· | ||||
| N1—H1···O2 | 0.86 | 2.43 | 2.971 (3) | 122 |
| C16—H16···O1iv | 0.93 | 2.51 | 3.248 (4) | 136 |
| C13—H13 | 0.97 | 3.30 | 3.983 (3) | 129 |