| Literature DB >> 27746925 |
Abstract
A new polymorph of the title compound, [Re(NCS)(C7H8N2O)(CO)3], crystallizing in the space group P21/n, has been obtained and structurally characterized by the experiment and DFT calculations. In this complex, the rhenium(I) cation is octa-hedrally coordinated by three carbonyl groups in a facial configuration, the N,O-bidentate N-methyl-pyridine-2-carboxamide ligand and the N-bonded thio-cyanate anion. Neighbouring mol-ecules are linked into a three-dimensional network by inter-molecular N-H⋯S and C-H⋯S inter-actions.Entities:
Keywords: N-methylpyridine-2-carboxyamide ligand; crystal structure; polymorphism; thiocyanate ion; tricarbonylrhenium(I) complex
Year: 2016 PMID: 27746925 PMCID: PMC5050760 DOI: 10.1107/S205698901601389X
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, with displacement ellipsoids for the non-H atoms drawn at the 50% probability level.
Comparison of selected bond lengths, distances (Å) and angles (°) between the experiments and calculations from three different basis sets for the studied complex(
| Triclinic( | Monoclinic | 6–31G(d,p) | 6–31G++(d,p) | 6–311G++(d,p) | |
|---|---|---|---|---|---|
| Re1—C1 | 1.915 (4) | 1.9180 (16) | 1.9328 | 1.9306 | 1.9329 |
| Re1—C2 | 1.901 (4) | 1.9028 (16) | 1.9052 | 1.9016 | 1.9033 |
| Re1—C3 | 1.923 (4) | 1.9201 (16) | 1.9342 | 1.9297 | 1.9330 |
| Re1—N1 | 2.190 (3) | 2.1836 (13) | 2.2272 | 2.2079 | 2.2049 |
| Re1—O4 | 2.159 (2) | 2.1583 (10) | 2.2412 | 2.2257 | 2.2169 |
| Re1—N3 | 2.117 (3) | 2.1275 (13) | 2.1268 | 2.1076 | 2.0982 |
| C9—O4 | 1.261 (4) | 1.2581 (17) | 1.2524 | 1.2798 | 1.2773 |
| C9—N2 | 1.309 (5) | 1.3182 (18) | 1.3384 | 1.3388 | 1.3388 |
| C10—N2 | 1.461 (5) | 1.4610 (19) | 1.4630 | 1.4708 | 1.4698 |
| N1⋯O4 | 2.620 (4) | 2.623 (2) | 2.6616 | 2.6496 | 2.6401 |
| N1—Re1—O4 | 74.09 (10) | 74.33 (4) | 73.12 | 73.40 | 73.32 |
| N1—Re1—N3 | 83.91 (12) | 83.15 (5) | 81.16 | 81.40 | 81.12 |
| O4—Re1—N3 | 81.68 (11) | 82.40 (5) | 79.06 | 78.84 | 79.73 |
| C11—N3—Re1 | 167.0 (1) | 174.4 (1) | 157.29 | 161.39 | 167.84 |
| N1—Re1—C1 | 170.93 (13) | 172.55 (6) | 169.97 | 169.90 | 169.65 |
| O4—Re1—C2 | 168.57 (12) | 171.84 (6) | 170.77 | 170.63 | 170.91 |
| N3—Re1—C3 | 174.90 (12) | 177.96 (6) | 171.84 | 171.84 | 172.19 |
Notes: (DFT Calculations were carried out by means of GAUSSIAN09 software (Frisch et al., 2009 ▸) using the B3LYP functional and the LANL2DZ basis set for the Re atom; (data from Lyczko et al. (2015 ▸).
Figure 2Graphical representations showing the overlays of the molecular structures obtained for the [Re(CO)3(LH(Me) NO)NCS] complex from diffraction experiments and DFT calculations. The monoclinic form is blue, the triclinic form green and the DFT-optimized structure [B3LYP/LANL2DZ,6–311 G++(d,p)] is red.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2⋯S1i | 0.84 (2) | 2.57 (2) | 3.3642 (14) | 158.0 (19) |
| C7—H7⋯S1i | 0.95 | 2.90 | 3.8255 (16) | 166 |
| C10—H10 | 0.98 | 2.98 | 3.8445 (17) | 148 |
Symmetry codes: (i) ; (ii) .
Figure 3Fragment of the crystal structure of the title complex showing N—H⋯S and C—H⋯S hydrogen-bonding interactions as dashed lines.
Experimental details
| Crystal data | |
| Chemical formula | [Re(NCS)(C7H8N2O)(CO)3] |
|
| 464.46 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 8.3456 (1), 13.3241 (1), 12.7011 (1) |
| β (°) | 99.284 (1) |
|
| 1393.83 (2) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 8.88 |
| Crystal size (mm) | 0.15 × 0.12 × 0.08 |
| Data collection | |
| Diffractometer | Agilent SuperNova Dual Source diffractometer with an Eos detector |
| Absorption correction | Multi-scan ( |
|
| 0.629, 1.000 |
| No. of measured, independent and observed [ | 77774, 4060, 3921 |
|
| 0.041 |
| (sin θ/λ)max (Å−1) | 0.703 |
| Refinement | |
|
| 0.011, 0.025, 1.11 |
| No. of reflections | 4060 |
| No. of parameters | 186 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.42, −0.51 |
Computer programs: CrysAlis PRO (Agilent, 2014 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), Mercury (Macrae et al., 2008 ▸) and publCIF (Westrip, 2010 ▸).
| [Re(NCS)(C7H8N2O)(CO)3] | |
| Monoclinic, | Mo |
| Cell parameters from 49644 reflections | |
| θ = 3.1–31.3° | |
| µ = 8.88 mm−1 | |
| β = 99.284 (1)° | |
| Block, yellow | |
| 0.15 × 0.12 × 0.08 mm |
| Agilent SuperNova Dual Source diffractometer with an Eos detector | 4060 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 3921 reflections with |
| Detector resolution: 16.0131 pixels mm-1 | |
| ω scans | θmax = 30.0°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 77774 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.005 | |
| 4060 reflections | Δρmax = 0.42 e Å−3 |
| 186 parameters | Δρmin = −0.51 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Re1 | 0.94102 (2) | 0.61839 (2) | 0.78536 (2) | 0.01041 (2) | |
| S1 | 0.39614 (5) | 0.76937 (3) | 0.72060 (3) | 0.01731 (8) | |
| O2 | 0.81867 (15) | 0.46596 (9) | 0.93364 (10) | 0.0228 (3) | |
| N2 | 0.96200 (16) | 0.75572 (10) | 0.48766 (10) | 0.0133 (2) | |
| O1 | 1.07960 (14) | 0.74704 (9) | 0.97900 (9) | 0.0203 (2) | |
| C2 | 0.86838 (19) | 0.52386 (12) | 0.87960 (12) | 0.0161 (3) | |
| O4 | 0.99371 (13) | 0.71917 (8) | 0.66237 (8) | 0.0127 (2) | |
| N1 | 0.85068 (15) | 0.54369 (9) | 0.63442 (10) | 0.0125 (2) | |
| O3 | 1.27172 (14) | 0.51162 (9) | 0.82262 (9) | 0.0184 (2) | |
| C3 | 1.14740 (19) | 0.55136 (11) | 0.80679 (11) | 0.0135 (3) | |
| C1 | 1.02572 (18) | 0.69876 (11) | 0.90694 (12) | 0.0145 (3) | |
| C5 | 0.7205 (2) | 0.41062 (12) | 0.52690 (14) | 0.0192 (3) | |
| H5 | 0.6744 | 0.3453 | 0.5226 | 0.023* | |
| C6 | 0.7256 (2) | 0.46596 (12) | 0.43525 (13) | 0.0184 (3) | |
| H6 | 0.6811 | 0.4396 | 0.3673 | 0.022* | |
| C8 | 0.85873 (18) | 0.59693 (11) | 0.54460 (12) | 0.0120 (3) | |
| C4 | 0.78361 (19) | 0.45171 (11) | 0.62492 (13) | 0.0159 (3) | |
| H4 | 0.7794 | 0.4136 | 0.6876 | 0.019* | |
| C9 | 0.94147 (17) | 0.69584 (11) | 0.56703 (11) | 0.0116 (3) | |
| N3 | 0.71182 (16) | 0.69184 (10) | 0.75566 (10) | 0.0149 (2) | |
| C7 | 0.79640 (19) | 0.56049 (12) | 0.44386 (12) | 0.0157 (3) | |
| H7 | 0.8021 | 0.5995 | 0.3820 | 0.019* | |
| C10 | 1.0420 (2) | 0.85309 (12) | 0.50654 (13) | 0.0166 (3) | |
| H10A | 0.9883 | 0.8922 | 0.5562 | 0.025* | |
| H10B | 1.0349 | 0.8894 | 0.4389 | 0.025* | |
| H10C | 1.1563 | 0.8430 | 0.5372 | 0.025* | |
| C11 | 0.58131 (19) | 0.72422 (11) | 0.74029 (11) | 0.0130 (3) | |
| H2 | 0.921 (3) | 0.7413 (16) | 0.4243 (18) | 0.026 (6)* |
| Re1 | 0.01001 (3) | 0.01132 (3) | 0.00967 (3) | 0.00108 (2) | 0.00092 (2) | 0.00183 (2) |
| S1 | 0.01461 (18) | 0.02173 (19) | 0.01450 (17) | 0.00703 (14) | −0.00096 (13) | −0.00273 (14) |
| O2 | 0.0222 (6) | 0.0262 (6) | 0.0202 (6) | −0.0021 (5) | 0.0040 (5) | 0.0091 (5) |
| N2 | 0.0159 (6) | 0.0124 (6) | 0.0111 (6) | −0.0027 (5) | 0.0008 (5) | 0.0007 (4) |
| O1 | 0.0199 (6) | 0.0212 (6) | 0.0190 (6) | 0.0012 (5) | 0.0009 (5) | −0.0047 (4) |
| C2 | 0.0129 (7) | 0.0196 (7) | 0.0149 (7) | 0.0029 (6) | −0.0005 (5) | 0.0008 (6) |
| O4 | 0.0134 (5) | 0.0126 (5) | 0.0117 (5) | −0.0016 (4) | 0.0008 (4) | 0.0012 (4) |
| N1 | 0.0118 (6) | 0.0120 (6) | 0.0137 (6) | 0.0010 (4) | 0.0023 (5) | 0.0009 (4) |
| O3 | 0.0155 (5) | 0.0195 (5) | 0.0199 (5) | 0.0041 (4) | 0.0016 (4) | 0.0027 (4) |
| C3 | 0.0154 (7) | 0.0134 (6) | 0.0115 (6) | −0.0018 (5) | 0.0014 (5) | 0.0008 (5) |
| C1 | 0.0118 (7) | 0.0156 (7) | 0.0161 (7) | 0.0035 (5) | 0.0027 (5) | 0.0030 (5) |
| C5 | 0.0205 (8) | 0.0145 (7) | 0.0236 (8) | −0.0067 (6) | 0.0061 (6) | −0.0028 (6) |
| C6 | 0.0195 (8) | 0.0182 (7) | 0.0180 (7) | −0.0049 (6) | 0.0048 (6) | −0.0053 (6) |
| C8 | 0.0110 (7) | 0.0118 (6) | 0.0133 (6) | 0.0000 (5) | 0.0022 (5) | 0.0005 (5) |
| C4 | 0.0171 (7) | 0.0124 (7) | 0.0189 (7) | −0.0015 (5) | 0.0051 (6) | 0.0024 (5) |
| C9 | 0.0099 (6) | 0.0117 (6) | 0.0131 (6) | 0.0016 (5) | 0.0014 (5) | 0.0011 (5) |
| N3 | 0.0155 (6) | 0.0155 (6) | 0.0136 (6) | 0.0012 (5) | 0.0021 (5) | 0.0003 (5) |
| C7 | 0.0179 (7) | 0.0161 (7) | 0.0134 (7) | −0.0021 (6) | 0.0036 (6) | −0.0006 (5) |
| C10 | 0.0194 (8) | 0.0128 (7) | 0.0170 (7) | −0.0038 (6) | 0.0012 (6) | 0.0022 (5) |
| C11 | 0.0165 (7) | 0.0121 (6) | 0.0103 (6) | −0.0006 (5) | 0.0011 (5) | −0.0010 (5) |
| Re1—C2 | 1.9028 (16) | O3—C3 | 1.1533 (19) |
| Re1—C1 | 1.9180 (16) | C5—C4 | 1.384 (2) |
| Re1—C3 | 1.9201 (16) | C5—C6 | 1.384 (2) |
| Re1—N3 | 2.1275 (13) | C5—H5 | 0.9500 |
| Re1—O4 | 2.1583 (10) | C6—C7 | 1.388 (2) |
| Re1—N1 | 2.1836 (13) | C6—H6 | 0.9500 |
| S1—C11 | 1.6394 (16) | C8—C7 | 1.389 (2) |
| O2—C2 | 1.1533 (19) | C8—C9 | 1.494 (2) |
| N2—C9 | 1.3182 (18) | C4—H4 | 0.9500 |
| N2—C10 | 1.4610 (19) | N3—C11 | 1.158 (2) |
| N2—H2 | 0.84 (2) | C7—H7 | 0.9500 |
| O1—C1 | 1.1494 (19) | C10—H10A | 0.9800 |
| O4—C9 | 1.2581 (17) | C10—H10B | 0.9800 |
| N1—C4 | 1.3446 (19) | C10—H10C | 0.9800 |
| N1—C8 | 1.3542 (18) | ||
| C2—Re1—C1 | 88.66 (7) | C4—C5—H5 | 120.4 |
| C2—Re1—C3 | 88.42 (6) | C6—C5—H5 | 120.4 |
| C1—Re1—C3 | 86.56 (6) | C5—C6—C7 | 119.17 (15) |
| C2—Re1—N3 | 92.72 (6) | C5—C6—H6 | 120.4 |
| C1—Re1—N3 | 95.16 (6) | C7—C6—H6 | 120.4 |
| C3—Re1—N3 | 177.96 (5) | N1—C8—C7 | 122.06 (14) |
| C2—Re1—O4 | 171.84 (5) | N1—C8—C9 | 112.69 (13) |
| C1—Re1—O4 | 98.26 (5) | C7—C8—C9 | 125.25 (13) |
| C3—Re1—O4 | 96.27 (5) | N1—C4—C5 | 122.25 (14) |
| N3—Re1—O4 | 82.40 (4) | N1—C4—H4 | 118.9 |
| C2—Re1—N1 | 98.66 (6) | C5—C4—H4 | 118.9 |
| C1—Re1—N1 | 172.54 (6) | O4—C9—N2 | 121.26 (14) |
| C3—Re1—N1 | 95.00 (5) | O4—C9—C8 | 118.64 (13) |
| N3—Re1—N1 | 83.15 (5) | N2—C9—C8 | 120.08 (13) |
| O4—Re1—N1 | 74.33 (4) | C11—N3—Re1 | 174.40 (12) |
| C9—N2—C10 | 121.62 (13) | C6—C7—C8 | 118.77 (14) |
| C9—N2—H2 | 120.5 (15) | C6—C7—H7 | 120.6 |
| C10—N2—H2 | 117.6 (15) | C8—C7—H7 | 120.6 |
| O2—C2—Re1 | 177.17 (14) | N2—C10—H10A | 109.5 |
| C9—O4—Re1 | 117.61 (9) | N2—C10—H10B | 109.5 |
| C4—N1—C8 | 118.59 (13) | H10A—C10—H10B | 109.5 |
| C4—N1—Re1 | 125.03 (10) | N2—C10—H10C | 109.5 |
| C8—N1—Re1 | 116.34 (10) | H10A—C10—H10C | 109.5 |
| O3—C3—Re1 | 178.12 (13) | H10B—C10—H10C | 109.5 |
| O1—C1—Re1 | 178.53 (13) | N3—C11—S1 | 179.00 (14) |
| C4—C5—C6 | 119.15 (15) | ||
| C4—C5—C6—C7 | 1.2 (2) | C10—N2—C9—O4 | −1.8 (2) |
| C4—N1—C8—C7 | 1.7 (2) | C10—N2—C9—C8 | 179.84 (13) |
| Re1—N1—C8—C7 | −176.03 (12) | N1—C8—C9—O4 | 0.19 (19) |
| C4—N1—C8—C9 | −177.88 (13) | C7—C8—C9—O4 | −179.33 (14) |
| Re1—N1—C8—C9 | 4.44 (16) | N1—C8—C9—N2 | 178.59 (13) |
| C8—N1—C4—C5 | −1.1 (2) | C7—C8—C9—N2 | −0.9 (2) |
| Re1—N1—C4—C5 | 176.40 (12) | C5—C6—C7—C8 | −0.6 (2) |
| C6—C5—C4—N1 | −0.4 (2) | N1—C8—C7—C6 | −0.8 (2) |
| Re1—O4—C9—N2 | 176.79 (11) | C9—C8—C7—C6 | 178.65 (14) |
| Re1—O4—C9—C8 | −4.83 (17) |
| H··· | ||||
| N2—H2···S1i | 0.84 (2) | 2.57 (2) | 3.3642 (14) | 158.0 (19) |
| C7—H7···S1i | 0.95 | 2.90 | 3.8255 (16) | 166 |
| C10—H10 | 0.98 | 2.98 | 3.8445 (17) | 148 |