Literature DB >> 27746049

The Ribosome as a Platform for mRNA and Nascent Polypeptide Quality Control.

Toshifumi Inada1.   

Abstract

Accurate gene expression is a prerequisite for all cellular processes. Quality control machineries respond to errors during protein synthesis by refolding polypeptides or targeting them for degradation. As another layer of gene expression control, aberrant mRNAs can also be detected and eliminated by mRNA quality control systems while engaging the ribosome. In this review, I focus on recent studies on the cotranslational quality control mechanisms induced by abnormal translational elongation and termination, which result in the rapid degradation of aberrant polypeptides and mRNAs. Emerging evidence indicates that the ribosome has central roles in quality control processes, acting as a platform for discrimination during protein biogenesis and for initiation of downstream events that determine the fate of aberrant polypeptides and mRNAs.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27746049     DOI: 10.1016/j.tibs.2016.09.005

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  26 in total

1.  Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii.

Authors:  Zhifei Li; Qiang Guo; Lvqin Zheng; Yongsheng Ji; Yi-Ting Xie; De-Hua Lai; Zhao-Rong Lun; Xun Suo; Ning Gao
Journal:  Cell Res       Date:  2017-08-15       Impact factor: 25.617

2.  RQT complex dissociates ribosomes collided on endogenous RQC substrate SDD1.

Authors:  Yoshitaka Matsuo; Petr Tesina; Shizuka Nakajima; Masato Mizuno; Akinori Endo; Robert Buschauer; Jingdong Cheng; Okuto Shounai; Ken Ikeuchi; Yasushi Saeki; Thomas Becker; Roland Beckmann; Toshifumi Inada
Journal:  Nat Struct Mol Biol       Date:  2020-03-23       Impact factor: 15.369

3.  Most Alternative Isoforms Are Not Functionally Important.

Authors:  Michael L Tress; Federico Abascal; Alfonso Valencia
Journal:  Trends Biochem Sci       Date:  2017-05-05       Impact factor: 13.807

4.  Translational read-through promotes aggregation and shapes stop codon identity.

Authors:  Lior Kramarski; Eyal Arbely
Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971

5.  Nascent polypeptide within the exit tunnel stabilizes the ribosome to counteract risky translation.

Authors:  Yuhei Chadani; Nobuyuki Sugata; Tatsuya Niwa; Yosuke Ito; Shintaro Iwasaki; Hideki Taguchi
Journal:  EMBO J       Date:  2021-10-20       Impact factor: 11.598

6.  Distinct elongation stalls during translation are linked with distinct pathways for mRNA degradation.

Authors:  Anthony J Veltri; Karole N D'Orazio; Laura N Lessen; Raphael Loll-Krippleber; Grant W Brown; Rachel Green
Journal:  Elife       Date:  2022-07-27       Impact factor: 8.713

Review 7.  The Growing Toolbox for Protein Synthesis Studies.

Authors:  Shintaro Iwasaki; Nicholas T Ingolia
Journal:  Trends Biochem Sci       Date:  2017-05-28       Impact factor: 13.807

8.  Release of Ubiquitinated and Non-ubiquitinated Nascent Chains from Stalled Mammalian Ribosomal Complexes by ANKZF1 and Ptrh1.

Authors:  Kazushige Kuroha; Alexandra Zinoviev; Christopher U T Hellen; Tatyana V Pestova
Journal:  Mol Cell       Date:  2018-09-20       Impact factor: 17.970

9.  Genome-wide Survey of Ribosome Collision.

Authors:  Peixun Han; Yuichi Shichino; Tilman Schneider-Poetsch; Mari Mito; Satoshi Hashimoto; Tsuyoshi Udagawa; Kenji Kohno; Minoru Yoshida; Yuichiro Mishima; Toshifumi Inada; Shintaro Iwasaki
Journal:  Cell Rep       Date:  2020-05-05       Impact factor: 9.423

10.  Assessing the functional relevance of splice isoforms.

Authors:  Fernando Pozo; Laura Martinez-Gomez; Thomas A Walsh; José Manuel Rodriguez; Tomas Di Domenico; Federico Abascal; Jesús Vazquez; Michael L Tress
Journal:  NAR Genom Bioinform       Date:  2021-05-22
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