| Literature DB >> 27744689 |
Bryan S Der1, Emerson Glassey1, Bryan A Bartley2, Casper Enghuus3, Daniel B Goodman4,5, D Benjamin Gordon1, Christopher A Voigt1, Thomas E Gorochowski1.
Abstract
DNAplotlib ( www.dnaplotlib.org ) is a computational toolkit for the programmable visualization of highly customizable, standards-compliant genetic designs. Functions are provided to aid with both visualization tasks and to extract and overlay associated experimental data. High-quality output is produced in the form of vector-based PDFs, rasterized images, and animated movies. All aspects of the rendering process can be easily customized or extended by the user to cover new forms of genetic part or regulation. DNAplotlib supports improved communication of genetic design information and offers new avenues for static, interactive and dynamic visualizations that map and explore the links between the structure and function of genetic parts, devices and systems; including metabolic pathways and genetic circuits. DNAplotlib is cross-platform software developed using Python.Keywords: SBOLv; biodesign automation; standardization; synthetic biology; visualization
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Year: 2016 PMID: 27744689 DOI: 10.1021/acssynbio.6b00252
Source DB: PubMed Journal: ACS Synth Biol ISSN: 2161-5063 Impact factor: 5.110