Literature DB >> 27743028

DNA repeat sequences: diversity and versatility of functions.

Zhong Qian1, Sankar Adhya2.   

Abstract

Although discovered decades ago, the molecular identification, the diversity and versatility of functions, and the evolutionary origin of repeat DNA sequences (REPs) containing palindromic units in prokaryotes are now bringing attention to a wide range of biological scientists. A brief account of the current state of the repeat DNA sequences is presented here.

Keywords:  BIME; Palindromic units; REP; Repeat DNA sequence; naRNA

Mesh：

Year:  2016        PMID： 27743028     DOI： 10.1007/s00294-016-0654-7

Source DB:  PubMed          Journal:  Curr Genet        ISSN： 0172-8083            Impact factor:   3.886


  54 in total

1.  A Toll-like receptor recognizes bacterial DNA.

Authors:  H Hemmi; O Takeuchi; T Kawai; T Kaisho; S Sato; H Sanjo; M Matsumoto; K Hoshino; H Wagner; K Takeda; S Akira
Journal:  Nature       Date:  2000-12-07       Impact factor: 49.962

2.  Palindromic units are part of a new bacterial interspersed mosaic element (BIME).

Authors:  E Gilson; W Saurin; D Perrin; S Bachellier; M Hofnung
Journal:  Nucleic Acids Res       Date:  1991-04-11       Impact factor: 16.971

Review 3.  Adaptation in CRISPR-Cas Systems.

Authors:  Samuel H Sternberg; Hagen Richter; Emmanuelle Charpentier; Udi Qimron
Journal:  Mol Cell       Date:  2016-03-03       Impact factor: 17.970

4.  Palindromic units from E. coli as binding sites for a chromoid-associated protein.

Authors:  E Gilson; D Perrin; J M Clement; S Szmelcman; E Dassa; M Hofnung
Journal:  FEBS Lett       Date:  1986-10-06       Impact factor: 4.124

5.  A novel intercistronic regulatory element of prokaryotic operons.

Authors:  C F Higgins; G F Ames; W M Barnes; J M Clement; M Hofnung
Journal:  Nature       Date:  1982-08-19       Impact factor: 49.962

6.  Repetitive extragenic palindromic sequences in the Pseudomonas syringae pv. tomato DC3000 genome: extragenic signals for genome reannotation.

Authors:  Raquel Tobes; Eduardo Pareja
Journal:  Res Microbiol       Date:  2005-01-28       Impact factor: 3.992

Review 7.  Are all repeats created equal? Understanding DNA repeats at an individual level.

Authors:  Jinpu Yang; Fei Li
Journal:  Curr Genet       Date:  2016-06-03       Impact factor: 3.886

8.  The Nucleoid: an Overview.

Authors:  Akira Ishihama
Journal:  EcoSal Plus       Date:  2009-08

9.  Noncoding RNAs binding to the nucleoid protein HU in Escherichia coli.

Authors:  Mirjana Macvanin; Rotem Edgar; Feng Cui; Andrei Trostel; Victor Zhurkin; Sankar Adhya
Journal:  J Bacteriol       Date:  2012-08-31       Impact factor: 3.490

10.  A New Noncoding RNA Arranges Bacterial Chromosome Organization.

Authors:  Zhong Qian; Mirjana Macvanin; Emilios K Dimitriadis; Ximiao He; Victor Zhurkin; Sankar Adhya
Journal:  MBio       Date:  2015-08-25       Impact factor: 7.867
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  7 in total

Review 1.  An evolving view of copy number variants.

Authors:  Stephanie Lauer; David Gresham
Journal:  Curr Genet       Date:  2019-05-10       Impact factor: 3.886

Review 2.  Escherichia coli Residency in the Gut of Healthy Human Adults.

Authors:  Jonathan N V Martinson; Seth T Walk
Journal:  EcoSal Plus       Date:  2020-09

3.  A small RNA is functional in Escherichia fergusonii despite containing a large insertion.

Authors:  Austin P Wright; H Auguste Dutcher; Brianna Butler; Timothy J Nice; Rahul Raghavan
Journal:  Microbiology (Reading)       Date:  2021-10       Impact factor: 2.777

4.  Correcting palindromes in long reads after whole-genome amplification.

Authors:  Sven Warris; Elio Schijlen; Henri van de Geest; Rahulsimham Vegesna; Thamara Hesselink; Bas Te Lintel Hekkert; Gabino Sanchez Perez; Paul Medvedev; Kateryna D Makova; Dick de Ridder
Journal:  BMC Genomics       Date:  2018-11-06       Impact factor: 3.969

5.  Repetitive DNA profile of the amphibian mitogenome.

Authors:  Noel Cabañas; Arturo Becerra; David Romero; Tzipe Govezensky; Jesús Javier Espinosa-Aguirre; Rafael Camacho-Carranza
Journal:  BMC Bioinformatics       Date:  2020-05-19       Impact factor: 3.169

Review 6.  The promising role of new molecular biomarkers in prostate cancer: from coding and non-coding genes to artificial intelligence approaches.

Authors:  Ana Paula Alarcón-Zendejas; Anna Scavuzzo; Miguel A Jiménez-Ríos; Rosa M Álvarez-Gómez; Rogelio Montiel-Manríquez; Clementina Castro-Hernández; Miguel A Jiménez-Dávila; Delia Pérez-Montiel; Rodrigo González-Barrios; Francisco Jiménez-Trejo; Cristian Arriaga-Canon; Luis A Herrera
Journal:  Prostate Cancer Prostatic Dis       Date:  2022-04-14       Impact factor: 5.455

7.  Generation of the tumor-suppressive secretome from tumor cells.

Authors:  Shengzhi Liu; Xun Sun; Kexin Li; Rongrong Zha; Yan Feng; Tomohiko Sano; Chuanpeng Dong; Yunlong Liu; Uma K Aryal; Akihiro Sudo; Bai-Yan Li; Hiroki Yokota
Journal:  Theranostics       Date:  2021-07-25       Impact factor: 11.556
  7 in total

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