Literature DB >> 27741574

DNA Polymerase ν Rapidly Bypasses O6-Methyl-dG but Not O6-[4-(3-Pyridyl)-4-oxobutyl-dG and O2-Alkyl-dTs.

A S Prakasha Gowda1, Thomas E Spratt1.   

Abstract

4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK) is a potent tobacco carcinogen that forms mutagenic DNA adducts including O6-methyl-2'-deoxyguanosine (O6-Me-dG), O6-[4-(3-pyridyl)-4-oxobut-1-yl]-dG (O6-POB-dG), O2-methylthymidine (O2-Me-dT), and O2-POB-dT. We evaluated the ability of human DNA polymerase ν to bypass this damage to evaluate the structural constraints on substrates for pol ν and to evaluate if there is kinetic evidence suggesting the in vivo activity of pol ν on tobacco-induced DNA damage. Presteady-state kinetic analysis has indicated that O6-Me-dG is a good substrate for pol ν, while O6-POB-dG and the O2-alkyl-dT adducts are poor substrates for pol ν. The reactivity with O6-Me-dG is high with a preference for dCTP > dGTP > dATP > dTTP. The catalytic activity of pol ν toward O6-Me-dG is high and can potentially be involved in its bypass in vivo. In contrast, pol ν is unlikely to bypass O6-POB-dG or the O2-alkyl-dTs in vivo.

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Year:  2016        PMID: 27741574      PMCID: PMC5673091          DOI: 10.1021/acs.chemrestox.6b00318

Source DB:  PubMed          Journal:  Chem Res Toxicol        ISSN: 0893-228X            Impact factor:   3.739


  44 in total

1.  Low fidelity bypass of O(2)-(3-pyridyl)-4-oxobutylthymine, the most persistent bulky adduct produced by the tobacco specific nitrosamine 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone by model DNA polymerases.

Authors:  A S Prakasha Gowda; Gowdahalli Krishnegowda; Zucai Suo; Shantu Amin; Thomas E Spratt
Journal:  Chem Res Toxicol       Date:  2012-05-01       Impact factor: 3.739

2.  The structure of a high fidelity DNA polymerase bound to a mismatched nucleotide reveals an "ajar" intermediate conformation in the nucleotide selection mechanism.

Authors:  Eugene Y Wu; Lorena S Beese
Journal:  J Biol Chem       Date:  2011-03-19       Impact factor: 5.157

3.  Misincorporation and stalling at O(6)-methylguanine and O(6)-benzylguanine: evidence for inactive polymerase complexes.

Authors:  Adrienne M Woodside; F Peter Guengerich
Journal:  Biochemistry       Date:  2002-01-22       Impact factor: 3.162

4.  Accuracy of lesion bypass by yeast and human DNA polymerase eta.

Authors:  M T Washington; R E Johnson; L Prakash; S Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

5.  Kinetics of nucleotide incorporation opposite DNA bulky guanine N2 adducts by processive bacteriophage T7 DNA polymerase (exonuclease-) and HIV-1 reverse transcriptase.

Authors:  Hong Zang; Thomas M Harris; F Peter Guengerich
Journal:  J Biol Chem       Date:  2004-11-08       Impact factor: 5.157

6.  Kinetic analysis of the bypass of a bulky DNA lesion catalyzed by human Y-family DNA polymerases.

Authors:  Shanen M Sherrer; Laura E Sanman; Cynthia X Xia; Eric R Bolin; Chanchal K Malik; Georgia Efthimiopoulos; Ashis K Basu; Zucai Suo
Journal:  Chem Res Toxicol       Date:  2012-02-21       Impact factor: 3.739

7.  Facile syntheses of O(2)-[4-(3-pyridyl-4-oxobut-1-yl]thymidine, the major adduct formed by tobacco specific nitrosamine 4-methylnitrosamino-1-(3-pyridyl)-1-butanone (NNK) in vivo, and its site-specifically adducted oligodeoxynucleotides.

Authors:  Gowdahalli Krishnegowda; Arun K Sharma; Jacek Krzeminski; A S Prakasha Gowda; Jyh-Ming Lin; Dhimant Desai; Thomas E Spratt; Shantu Amin
Journal:  Chem Res Toxicol       Date:  2011-05-05       Impact factor: 3.739

8.  Evidence for the involvement of human DNA polymerase N in the repair of DNA interstrand cross-links.

Authors:  Laura Zietlow; Leigh Anne Smith; Mika Bessho; Tadayoshi Bessho
Journal:  Biochemistry       Date:  2009-12-15       Impact factor: 3.162

9.  Kinetics of extension of O6-methylguanine paired with cytosine or thymine in defined oligonucleotide sequences.

Authors:  M K Dosanjh; G Galeros; M F Goodman; B Singer
Journal:  Biochemistry       Date:  1991-12-10       Impact factor: 3.162

10.  How a homolog of high-fidelity replicases conducts mutagenic DNA synthesis.

Authors:  Young-Sam Lee; Yang Gao; Wei Yang
Journal:  Nat Struct Mol Biol       Date:  2015-03-16       Impact factor: 15.369

View more
  3 in total

1.  The roles of polymerases ν and θ in replicative bypass of O 6- and N 2-alkyl-2'-deoxyguanosine lesions in human cells.

Authors:  Hua Du; Pengcheng Wang; Jun Wu; Xiaomei He; Yinsheng Wang
Journal:  J Biol Chem       Date:  2020-02-25       Impact factor: 5.157

2.  Computational insights into the mutagenicity of two tobacco-derived carcinogenic DNA lesions.

Authors:  Katie A Wilson; Josh L Garden; Natasha T Wetmore; Stacey D Wetmore
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

Review 3.  Beyond the Lesion: Back to High Fidelity DNA Synthesis.

Authors:  Joseph D Kaszubowski; Michael A Trakselis
Journal:  Front Mol Biosci       Date:  2022-01-05
  3 in total

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