Literature DB >> 27738745

Next-generation molecular diagnosis: single-cell sequencing from bench to bedside.

Wanjun Zhu1,2, Xiao-Yan Zhang3, Sadie L Marjani4, Jialing Zhang1, Wengeng Zhang5, Shixiu Wu6, Xinghua Pan7,8.   

Abstract

Single-cell sequencing (SCS) is a fast-growing, exciting field in genomic medicine. It enables the high-resolution study of cellular heterogeneity, and reveals the molecular basis of complicated systems, which facilitates the identification of new biomarkers for diagnosis and for targeting therapies. It also directly promotes the next generation of genomic medicine because of its ultra-high resolution and sensitivity that allows for the non-invasive and early detection of abnormalities, such as aneuploidy, chromosomal translocation, and single-gene disorders. This review provides an overview of the current progress and prospects for the diagnostic applications of SCS, specifically in pre-implantation genetic diagnosis/screening, non-invasive prenatal diagnosis, and analysis of circulating tumor cells. These analyses will accelerate the early and precise control of germline- or somatic-mutation-based diseases, particularly single-gene disorders, chromosome abnormalities, and cancers.

Entities:  

Keywords:  Circulating tumor cells (CTCs); Liquid biopsies; Non-invasive prenatal diagnosis (NIPD); Pre-implantation genetic diagnosis (PGD); Pre-implantation genetic screening (PGS); Precision medicine; Single-cell analysis (SCA); Single-cell sequencing (SCS)

Mesh:

Year:  2016        PMID: 27738745     DOI: 10.1007/s00018-016-2368-x

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  111 in total

Review 1.  The use of cell-free fetal nucleic acids in maternal blood for non-invasive prenatal diagnosis.

Authors:  Caroline F Wright; Hilary Burton
Journal:  Hum Reprod Update       Date:  2008-10-22       Impact factor: 15.610

2.  A new workflow for whole-genome sequencing of single human cells.

Authors:  Vera Binder; Christoph Bartenhagen; Vera Okpanyi; Michael Gombert; Birte Moehlendick; Bianca Behrens; Hans-Ulrich Klein; Harald Rieder; Pina Fanny Ida Krell; Martin Dugas; Nikolas Hendrik Stoecklein; Arndt Borkhardt
Journal:  Hum Mutat       Date:  2014-08-18       Impact factor: 4.878

3.  Fine-needle aspiration cytology of the solid variant of papillary thyroid carcinoma: a study of 13 cases with clinical, histologic, and ultrasound correlations.

Authors:  Tamar A Giorgadze; Theresa Scognamiglio; Grace C H Yang
Journal:  Cancer Cytopathol       Date:  2015-01-08       Impact factor: 5.284

4.  Evaluation of targeted next-generation sequencing-based preimplantation genetic diagnosis of monogenic disease.

Authors:  Nathan R Treff; Anastasia Fedick; Xin Tao; Batsal Devkota; Deanne Taylor; Richard T Scott
Journal:  Fertil Steril       Date:  2013-01-09       Impact factor: 7.329

5.  Detection of aneuploidy from single fetal nucleated red blood cells using whole genome sequencing.

Authors:  Rui Hua; Angela N Barrett; Tuan Zea Tan; Zhouwei Huang; Aniza Puteri Mahyuddin; Sukumar Ponnusamy; Jaspal Singh Sandhu; Sherry S Y Ho; Jerry K Y Chan; Samuel Chong; Song Quan; Mahesh Choolani
Journal:  Prenat Diagn       Date:  2014-10-16       Impact factor: 3.050

6.  Molecular profiling of single circulating tumor cells with diagnostic intention.

Authors:  Bernhard Polzer; Gianni Medoro; Sophie Pasch; Francesca Fontana; Laura Zorzino; Aurelia Pestka; Ulrich Andergassen; Franziska Meier-Stiegen; Zbigniew T Czyz; Barbara Alberter; Steffi Treitschke; Thomas Schamberger; Maximilian Sergio; Giulia Bregola; Anna Doffini; Stefano Gianni; Alex Calanca; Giulio Signorini; Chiara Bolognesi; Arndt Hartmann; Peter A Fasching; Maria T Sandri; Brigitte Rack; Tanja Fehm; Giuseppe Giorgini; Nicolò Manaresi; Christoph A Klein
Journal:  EMBO Mol Med       Date:  2014-11       Impact factor: 12.137

7.  RNA-Seq of single prostate CTCs implicates noncanonical Wnt signaling in antiandrogen resistance.

Authors:  David T Miyamoto; Yu Zheng; Ben S Wittner; Richard J Lee; Huili Zhu; Katherine T Broderick; Rushil Desai; Douglas B Fox; Brian W Brannigan; Julie Trautwein; Kshitij S Arora; Niyati Desai; Douglas M Dahl; Lecia V Sequist; Matthew R Smith; Ravi Kapur; Chin-Lee Wu; Toshi Shioda; Sridhar Ramaswamy; David T Ting; Mehmet Toner; Shyamala Maheswaran; Daniel A Haber
Journal:  Science       Date:  2015-09-18       Impact factor: 47.728

8.  Rapid phenotypic and genomic change in response to therapeutic pressure in prostate cancer inferred by high content analysis of single circulating tumor cells.

Authors:  Angel E Dago; Asya Stepansky; Anders Carlsson; Madelyn Luttgen; Jude Kendall; Timour Baslan; Anand Kolatkar; Michael Wigler; Kelly Bethel; Mitchell E Gross; James Hicks; Peter Kuhn
Journal:  PLoS One       Date:  2014-08-01       Impact factor: 3.240

Review 9.  Cancer genomics: one cell at a time.

Authors:  Nicholas E Navin
Journal:  Genome Biol       Date:  2014-08-30       Impact factor: 13.583

10.  A Versatile Microarray Platform for Capturing Rare Cells.

Authors:  Falko Brinkmann; Michael Hirtz; Anna Haller; Tobias M Gorges; Michael J Vellekoop; Sabine Riethdorf; Volkmar Müller; Klaus Pantel; Harald Fuchs
Journal:  Sci Rep       Date:  2015-10-23       Impact factor: 4.379

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  5 in total

1.  Next-generation Sequencing (NGS) Analysis on Single Circulating Tumor Cells (CTCs) with No Need of Whole-genome Amplification (WGA).

Authors:  Raffaele Palmirotta; Domenica Lovero; Erica Silvestris; Claudia Felici; Davide Quaresmini; Paola Cafforio; Franco Silvestris
Journal:  Cancer Genomics Proteomics       Date:  2017 May-Jun       Impact factor: 4.069

Review 2.  Precision medicine journey through omics approach.

Authors:  Mandana Hasanzad; Negar Sarhangi; Sima Ehsani Chimeh; Nayereh Ayati; Monireh Afzali; Fatemeh Khatami; Shekoufeh Nikfar; Hamid Reza Aghaei Meybodi
Journal:  J Diabetes Metab Disord       Date:  2021-11-24

3.  Single-Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangioleiomyomatosis Cell.

Authors:  Minzhe Guo; Jane J Yu; Anne Karina Perl; Kathryn A Wikenheiser-Brokamp; Matt Riccetti; Erik Y Zhang; Parvathi Sudha; Mike Adam; Andrew Potter; Elizabeth J Kopras; Krinio Giannikou; S Steven Potter; Sue Sherman; Stephen R Hammes; David J Kwiatkowski; Jeffrey A Whitsett; Francis X McCormack; Yan Xu
Journal:  Am J Respir Crit Care Med       Date:  2020-11-15       Impact factor: 30.528

Review 4.  Single cell sequencing: a distinct new field.

Authors:  Jian Wang; Yuanlin Song
Journal:  Clin Transl Med       Date:  2017-02-20

Review 5.  A Next-Generation Sequencing Primer-How Does It Work and What Can It Do?

Authors:  Yuriy O Alekseyev; Roghayeh Fazeli; Shi Yang; Raveen Basran; Thomas Maher; Nancy S Miller; Daniel Remick
Journal:  Acad Pathol       Date:  2018-05-06
  5 in total

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