| Literature DB >> 27738347 |
Meng Zhang1,2, Yangyang Wang1, Tingting Fang1, Yangke Cai3, Yue Xu1,2, Cunye Yan1, Li Zhang1,2, Chaozhao Liang1,2.
Abstract
CD44 is one of the commonly recognized stem cell markers, which plays a critical role in many cancer related cellular processes. Relationships between CD44 polymorphisms and cancer risk have been widely investigated previously, whereas results derived from these studies were inconclusive and controversial. We conducted present meta-analysis aiming to explore the association between CD44 polymorphisms and cancer risk. We calculated pooled odds ratios (ORs) corresponding with the 95% confidence intervals (CIs) to make the evaluation clear. Embase, Web of Science, PubMed and Cochrane Library databases were retrieved to identify all eligible publications. As a result, a total of 12 publications comprised 25,777 cases and 27,485 controls fulfilled the inclusion criteria. Nevertheless, the pooled analyses suggested that no significant association was uncovered between CD44 (rs10836347, rs11821102, rs13347, rs1425802, rs353639, rs713330 and rs187115) polymorphisms with overall cancer risk. Subsequently, we conducted subgroup analysis for rs13347 polymorphism based on source of control, and we identified a significantly increased cancer risk for the population-based (P-B) group restricted to a recessive model (TT vs. TC+CC: OR = 2.030, 95%CI: 1.163-3.545, PAdjust < 0.001). In conclusion, our meta-analysis demonstrates that CD44 polymorphisms may not represent risk factors for cancer. Future well-designed large-scale case-control studies are warranted to verify our findings.Entities:
Keywords: CD44; cancer; meta-analysis; polymorphism; systematic review
Mesh:
Substances:
Year: 2016 PMID: 27738347 PMCID: PMC5342795 DOI: 10.18632/oncotarget.12580
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Figure 1Flow diagram of included studies for the meta-analysis
Baseline Characteristics of studies included
| SNP | First Author | Year | Ethnicity | Genotyping Method | Source of Control | Cancer Type | Case | Control | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | AB | BB | AA | AB | BB | Y(HWE) | |||||||
| rs13347 | Wu | 2015 | Asian | RT-PCR | H-B | CRC | 416 | 441 | 89 | 578 | 348 | 63 | Y |
| C>T | Chou | 2014 | Asian | RT-PCR | H-B | HCC | 110 | 72 | 21 | 295 | 223 | 43 | Y |
| Wu | 2013 | Asian | Mass Array | H-B | AML | 163 | 196 | 62 | 254 | 171 | 36 | Y | |
| Tulsyan | 2013 | Caucasian | TaqMan | P-B | BC | 191 | 60 | 7 | 178 | 57 | 6 | Y | |
| Jiang | 2012 | Asian | Mass Array | H-B | BC | 813 | 850 | 190 | 1146 | 727 | 119 | Y | |
| Xiao | 2013 | Asian | Mass Array | P-B | BC | 386 | 418 | 102 | 606 | 297 | 40 | Y | |
| Chou | 2014 | Asian | RT-PCR | H-B | BC | 295 | 223 | 43 | 287 | 262 | 50 | Y | |
| Sharma | 2013 | Caucasian | TaqMan | H-B | BC | 293 | 104 | 8 | 154 | 42 | 4 | Y | |
| Yadav | 2015 | Caucasian | TaqMan | P-B | GBC | 378 | 201 | 31 | 162 | 80 | 8 | Y | |
| Weng | 2015 | Asian | TaqMan | H-B | UBC | 143 | 117 | 15 | 138 | 111 | 26 | Y | |
| rs10836347 | Wu | 2015 | Asian | RT-PCR | H-B | CRC | 821 | 120 | 5 | 851 | 129 | 9 | Y |
| C>T | Chou | 2014 | Asian | RT-PCR | H-B | HCC | 180 | 23 | 0 | 487 | 69 | 5 | Y |
| Wu | 2013 | Asian | Mass Array | H-B | AML | 364 | 55 | 2 | 404 | 55 | 2 | Y | |
| Jiang | 2012 | Asian | Mass Array | H-B | BC | 906 | 139 | 4 | 995 | 156 | 6 | Y | |
| Xiao | 2013 | Asian | Mass Array | P-B | NC | 785 | 118 | 3 | 792 | 147 | 4 | Y | |
| Chou | 2014 | Asian | RT-PCR | H-B | OSCC | 522 | 73 | 4 | 487 | 69 | 5 | Y | |
| rs11821102 | Wu | 2015 | Asian | RT-PCR | H-B | CRC | 815 | 119 | 12 | 843 | 131 | 15 | N |
| A>G | Chou | 2014 | Asian | RT-PCR | H-B | HCC | 173 | 29 | 1 | 481 | 75 | 5 | Y |
| Wu | 2013 | Asian | Mass Array | H-B | AML | 370 | 50 | 1 | 398 | 59 | 4 | Y | |
| Jiang | 2012 | Asian | Mass Array | H-B | BC | 912 | 125 | 12 | 997 | 151 | 9 | Y | |
| Xiao | 2013 | Asian | Mass Array | P-B | NC | 796 | 100 | 10 | 805 | 129 | 9 | Y | |
| Chou | 2014 | Asian | RT-PCR | H-B | OSCC | 531 | 63 | 5 | 481 | 75 | 5 | Y | |
| Weng | 2015 | Asian | TaqMan | H-B | UBC | 222 | 50 | 3 | 234 | 39 | 2 | Y | |
| rs1425802 | Chou | 2014 | Asian | RT-PCR | H-B | HCC | 70 | 75 | 58 | 197 | 235 | 132 | N |
| A>G | Wu | 2013 | Asian | Mass Array | H-B | AML | 126 | 204 | 91 | 122 | 248 | 91 | Y |
| Jiang | 2012 | Asian | Mass Array | H-B | BC | 316 | 513 | 220 | 353 | 563 | 241 | Y | |
| Xiao | 2013 | Asian | Mass Array | P-B | NC | 270 | 450 | 186 | 299 | 442 | 202 | Y | |
| Chou | 2014 | Asian | RT-PCR | H-B | OSCC | 197 | 249 | 153 | 194 | 235 | 132 | N | |
| Weng | 2015 | Asian | TaqMan | H-B | UBC | 99 | 109 | 67 | 105 | 121 | 49 | Y | |
| rs187115 | Liu | 2015 | Asian | TaqMan | H-B | NSCLC | 133 | 86 | 15 | 336 | 119 | 13 | Y |
| A>G | Chou | 2014 | Asian | RT-PCR | H-B | HCC | 123 | 66 | 14 | 403 | 143 | 15 | Y |
| Sharma | 2013 | Caucasian | ARMS-PCR | H-B | GBC | 248 | 126 | 31 | 125 | 61 | 14 | Y | |
| Chou | 2014 | Asian | RT-PCR | H-B | OSCC | 336 | 227 | 36 | 403 | 143 | 15 | Y | |
| Yadav | 2015 | Caucasian | TaqMan | P-B | GBC | 353 | 178 | 79 | 150 | 70 | 30 | N | |
| Weng | 2015 | Asian | TaqMan | H-B | UBC | 204 | 68 | 3 | 178 | 87 | 10 | Y | |
| rs713330 | Chou | 2014 | Asian | RT-PCR | H-B | HCC | 167 | 36 | 0 | 467 | 86 | 8 | Y |
| C>T | Wu | 2013 | Asian | Mass Array | H-B | AML | 341 | 74 | 6 | 371 | 87 | 3 | Y |
| Jiang | 2012 | Asian | Mass Array | H-B | BC | 865 | 172 | 12 | 950 | 194 | 13 | Y | |
| Xiao | 2013 | Asian | Mass Array | P-B | NC | 732 | 164 | 10 | 751 | 180 | 12 | Y | |
| Chou | 2014 | Asian | RT-PCR | H-B | OSCC | 507 | 88 | 4 | 467 | 86 | 8 | Y | |
| Weng | 2015 | Asian | TaqMan | H-B | UBC | 223 | 49 | 3 | 231 | 42 | 3 | Y | |
| rs353639 | Tulsyan | 2013 | Caucasian | TaqMan | P-B | BC | 158 | 89 | 11 | 150 | 89 | 13 | Y |
| A>C | Sharma | 2013 | Caucasian | TaqMan | H-B | GBC | 253 | 130 | 22 | 120 | 68 | 12 | Y |
| Qiu | 2014 | Asian | Mass Array | H-B | GC | 211 | 90 | 10 | 310 | 100 | 8 | Y | |
| Yadav | 2015 | Caucasian | TaqMan | P-B | GBC | 388 | 174 | 48 | 167 | 68 | 15 | N | |
AML: Acute myeloid leukemia; BC: breast cancer; NC: Nasopharyngeal carcinoma; OSCC: Oral squamous cell carcinoma; GBC: Gallbladder cancer; GC: Gastric cancer; RT-PCR: reverse transcription-polymerase chain reaction; ARMS-PCR: Amplification Refractory Mutation System-Polymerase Chain Reaction; P-B: population-based; H-B: hospital-based; HWE: Hardy Weinberg Equilibrium; A: wild type; B: mutated type.
The overall analyses of CD44 polymorphisms and cancer risk
| SNP | Comparison | Subgroup | N | Random | Fixed | |||
|---|---|---|---|---|---|---|---|---|
| rs13347 | T VS. C | Overall | 10 | 0.000 | 0.455 | 1.272 (1.052-1.538) | 1.426 (1.348-1.508) | |
| C > T | T VS. C | Asian | 7 | 0.000 | 0.560 | 1.328 (1.055-1.671) | 1.462 (1.378-1.552) | |
| T VS. C | Caucasian | 3 | 0.726 | 0.184 | 1.000 | 1.129 (0.942-1.353) | 1.130 (0.944-1.353) | |
| T VS. C | MassArray | 3 | 0.005 | 1.766 (1.454-2.144) | 1.706 (1.581-1.842) | |||
| T VS. C | RT-PCR | 3 | 0.000 | 0.554 | 1.000 | 1.122 (0.766-1.643) | 1.207 (1.091-1.335) | |
| T VS. C | TaqMan | 4 | 0.348 | 0.618 | 1.000 | 1.038 (0.887-1.215) | 1.038 (0.895-1.204) | |
| T VS. C | H-B | 7 | 0.000 | 0.055 | 1.000 | 1.229 (0.996-1.516) | 1.360 (1.276-1.449) | |
| T VS. C | P-B | 3 | 0.000 | 0.216 | 1.000 | 1.366 (0.833-2.242) | 1.686 (1.494-1.904) | |
| T VS. C | BC | 5 | 0.000 | 0.105 | 1.000 | 1.302 (0.946-1.792) | 1.478 (1.376-1.588) | |
| TC VS. CC | Overall | 10 | 0.000 | 0.630 | 1.302 (1.046-1.622) | 1.476 (1.370-1.591) | ||
| TC VS. CC | Asian | 7 | 0.000 | 0.630 | 1.378 (1.058-1.796) | 1.536 (1.419-1.663) | ||
| TC VS. CC | Caucasian | 3 | 0.619 | 0.347 | 1.000 | 1.107 (0.893-1.372) | 1.108 (0.895-1.373) | |
| TC VS. CC | MassArray | 3 | 0.053 | 1.857 (1.528-2.257) | 1.806 (1.629-2.002) | |||
| TC VS. CC | RT-PCR | 3 | 0.000 | 0.754 | 1.000 | 1.091 (0.634-1.877) | 1.236 (1.080-1.415) | |
| TC VS. CC | TaqMan | 4 | 0.772 | 0.394 | 1.000 | 1.082 (0.901-1.299) | 1.083 (0.902-1.300) | |
| TC VS. CC | H-B | 7 | 0.000 | 0.058 | 1.000 | 1.274 (0.992-1.637) | 1.423 (1.307-1.550) | |
| TC VS. CC | P-B | 3 | 0.000 | 0.300 | 1.000 | 1.351 (0.765-2.388) | 1.662 (1.424-1.939) | |
| TC VS. CC | BC | 5 | 0.000 | 0.116 | 1.000 | 1.332 (0.932-1.903) | 1.523 (1.386-1.674) | |
| TC+TT VS. CC | Overall | 10 | 0.000 | 0.560 | 1.335 (1.055-1.691) | 1.537 (1.431-1.650) | ||
| TC+TT VS. CC | Asian | 7 | 0.000 | 0.560 | 1.421 (1.068-1.892) | 1.602 (1.486-1.728) | ||
| TC+TT VS. CC | Caucasian | 3 | 0.672 | 0.247 | 1.000 | 1.129 (0.918-1.389) | 1.130 (0.919-1.389) | |
| TC+TT VS. CC | MassArray | 3 | 0.015 | 2.003 (1.603-2.502) | 1.929 (1.749-2.128) | |||
| TC+TT VS. CC | RT-PCR | 3 | 0.000 | 0.666 | 1.000 | 1.125 (0.658-1.922) | 1.262 (1.110-1.436) | |
| TC+TT VS. CC | TaqMan | 4 | 0.631 | 0.445 | 1.000 | 1.070 (0.897-1.276) | 1.071 (0.898-1.276) | |
| TC+TT VS. CC | H-B | 7 | 0.000 | 0.057 | 1.000 | 1.296 (0.992-1.691) | 1.468 (1.353-1.592) | |
| TC+TT VS. CC | P-B | 3 | 0.000 | 0.266 | 1.000 | 1.418 (0.767-2.621) | 1.788 (1.542-2.072) | |
| TC+TT VS. CC | BC | 5 | 0.000 | 0.116 | 1.000 | 1.367 (0.926-2.017) | 1.596 (1.459-1.747) | |
| TT VS. CC | Overall | 10 | 0.000 | 0.385 | 1.601 (1.112-2.305) | 1.924 (1.674-2.210) | ||
| TT VS. CC | Asian | 7 | 0.000 | 0.595 | 1.684 (1.099-2.580) | 1.969 (1.707-2.272) | ||
| TT VS. CC | Caucasian | 3 | 0.753 | 0.292 | 1.000 | 1.341 (0.757-2.376) | 1.357 (0.770-2.391) | |
| TT VS. CC | MassArray | 3 | 0.048 | 2.836 (1.981-4.059) | 2.676 (2.217-3.230) | |||
| TT VS. CC | RT-PCR | 3 | 0.011 | 0.334 | 1.000 | 1.307 (0.759-2.249) | 1.394 (1.093-1.776) | |
| TT VS. CC | TaqMan | 4 | 0.226 | 0.784 | 1.000 | 0.964 (0.559-1.662) | 0.943 (0.620-1.435) | |
| TT VS. CC | H-B | 7 | 0.000 | 0.082 | 1.000 | 1.427 (0.956-2.129) | 1.725 (1.479-2.012) | |
| TT VS. CC | P-B | 3 | 0.024 | 0.064 | 1.000 | 2.167 (0.955-4.920) | 3.043 (2.183-4.240) | |
| TT VS. CC | BC | 5 | 0.000 | 0.102 | 1.000 | 1.674 (0.902-3.105) | 2.088 (1.745-2.499) | |
| TT VS. TC+CC | Overall | 10 | 0.001 | 0.315 | 1.453 (1.097-1.923) | 1.619 (1.414-1.853) | ||
| TT VS. TC+CC | Asian | 7 | 0.000 | 0.630 | 1.482 (1.069-2.054) | 1.639 (1.426-1.884) | ||
| TT VS. TC+CC | Caucasian | 3 | 0.744 | 0.328 | 1.000 | 1.309 (0.741-2.311) | 1.325 (0.754-2.327) | |
| TT VS. TC+CC | MassArray | 3 | 0.124 | 2.137 (1.606-2.843) | 2.062 (1.719-2.474) | |||
| TT VS. TC+CC | RT-PCR | 3 | 0.166 | 1.000 | 1.256 (0.903-1.747) | 1.276 (1.007-1.617) | ||
| TT VS. TC+CC | TaqMan | 4 | 0.225 | 0.684 | 1.000 | 0.941 (0.549-1.615) | 0.918 (0.607-1.387) | |
| TT VS. TC+CC | H-B | 7 | 0.005 | 0.076 | 1.000 | 1.314 (0.971-1.777) | 1.477 (1.271-1.715) | |
| TT VS. TC+CC | P-B | 3 | 0.154 | 2.030 (1.163-3.545) | 2.397 (1.732-3.317) | |||
| TT VS. TC+CC | BC | 5 | 0.002 | 0.071 | 1.000 | 1.529 (0.965-2.424) | 1.741 (1.461-2.075) | |
| rs10836347 | T VS. C | Overall | 6 | 0.804 | 0.155 | 1.000 | 0.920 (0.818-1.033) | 0.919 (0.818-1.033) |
| C > T | T VS. C | MassArray | 3 | 0.391 | 0.318 | 1.000 | 0.925 (0.794-1.078) | 0.925 (0.794-1.078) |
| T VS. C | RT-PCR | 3 | 0.811 | 0.308 | 1.000 | 0.912 (0.761-1.092) | 0.911 (0.761-1.090) | |
| T VS. C | H-B | 5 | 0.871 | 0.448 | 1.000 | 0.951 (0.833-1.086) | 0.950 (0.832-1.084) | |
| TC VS. CC | Overall | 6 | 0.828 | 0.346 | 1.000 | 0.942 (0.831-1.068) | 0.942 (0.831-1.067) | |
| TC VS. CC | MassArray | 3 | 0.370 | 0.370 | 1.000 | 0.928 (0.788-1.093) | 0.928 (0.788-1.093) | |
| TC VS. CC | RT-PCR | 3 | 0.959 | 0.692 | 1.000 | 0.961 (0.791-1.169) | 0.961 (0.791-1.169) | |
| TC VS. CC | H-B | 5 | 0.975 | 0.835 | 1.000 | 0.985 (0.854-1.136) | 0.985 (0.854-1.136) | |
| TC+TT VS. CC | Overall | 6 | 0.816 | 0.232 | 1.000 | 0.928 (0.820-1.050) | 0.928 (0.820-1.049) | |
| TC+TT VS. CC | MassArray | 3 | 0.366 | 0.336 | 1.000 | 0.924 (0.786-1.086) | 0.924 (0.786-1.085) | |
| TC+TT VS. CC | RT-PCR | 3 | 0.895 | 0.476 | 1.000 | 0.933 (0.771-1.130) | 0.933 (0.771-1.129) | |
| TC+TT VS. CC | H-B | 5 | 0.935 | 0.629 | 1.000 | 0.966 (0.840-1.112) | 0.966 (0.840-1.111) | |
| TT VS. CC | Overall | 6 | 0.973 | 0.171 | 1.000 | 0.683 (0.378-1.236) | 0.664 (0.370-1.193) | |
| TT VS. CC | MassArray | 3 | 0.937 | 0.618 | 1.000 | 0.803 (0.337-1.914) | 0.802 (0.337-1.908) | |
| TT VS. CC | RT-PCR | 3 | 0.785 | 0.168 | 1.000 | 0.594 (0.264-1.336) | 0.570 (0.257-1.266) | |
| TT VS. CC | H-B | 5 | 0.933 | 0.183 | 1.000 | 0.671 (0.352-1.279) | 0.649 (0.344-1.226) | |
| TT VS. TC+CC | Overall | 6 | 0.974 | 0.178 | 1.000 | 0.688 (0.380-1.244) | 0.669 (0.373-1.200) | |
| TT VS. TC+CC | MassArray | 3 | 0.944 | 0.633 | 1.000 | 0.810 (0.340-1.931) | 0.810 (0.340-1.925) | |
| TT VS. TC+CC | RT-PCR | 3 | 0.789 | 0.171 | 1.000 | 0.597 (0.265-1.341) | 0.573 (0.258-1.272) | |
| TT VS. TC+CC | H-B | 5 | 0.937 | 0.186 | 1.000 | 0.672 (0.353-1.281) | 0.651 (0.345-1.229) | |
| rs11821102 | G VS. A | Overall | 7 | 0.537 | 0.152 | 1.000 | 0.922 (0.825-1.030) | 0.922 (0.825-1.030) |
| A > G | G VS. A | MassArray | 3 | 0.655 | 0.163 | 1.000 | 0.896 (0.768-1.045) | 0.896 (0.768-1.045) |
| G VS. A | RT-PCR | 3 | 0.633 | 0.216 | 1.000 | 0.896 (0.753-1.066) | 0.896 (0.753-1.066) | |
| G VS. A | H-B | 6 | 0.497 | 0.359 | 1.000 | 0.944 (0.834-1.068) | 0.944 (0.834-1.068) | |
| G VS. A | Y | 6 | 0.410 | 0.206 | 1.000 | 0.922 (0.812-1.047) | 0.922 (0.813-1.046) | |
| GA VS. AA | Overall | 7 | 0.483 | 0.116 | 1.000 | 0.906 (0.801-1.025) | 0.906 (0.801-1.025) | |
| GA VS. AA | MassArray | 3 | 0.719 | 0.080 | 1.000 | 0.859 (0.725-1.018) | 0.859 (0.725-1.018) | |
| GA VS. AA | RT-PCR | 3 | 0.469 | 0.306 | 1.000 | 0.904 (0.745-1.097) | 0.904 (0.744-1.097) | |
| GA VS. AA | H-B | 6 | 0.521 | 0.365 | 1.000 | 0.939 (0.818-1.077) | 0.939 (0.818-1.076) | |
| GA VS. AA | Y | 6 | 0.369 | 0.126 | 1.000 | 0.900 (0.778-1.041) | 0.897 (0.781-1.031) | |
| GA+GG VS. AA | Overall | 7 | 0.509 | 0.126 | 1.000 | 0.911 (0.809-1.027) | 0.911 (0.809-1.027) | |
| GA+GG VS. AA | MassArray | 3 | 0.723 | 0.109 | 1.000 | 0.874 (0.741-1.031) | 0.874 (0.741-1.030) | |
| GA+GG VS. AA | RT-PCR | 3 | 0.538 | 0.251 | 1.000 | 0.896 (0.743-1.081) | 0.896 (0.743-1.081) | |
| GA+GG VS. AA | H-B | 6 | 0.510 | 0.354 | 1.000 | 0.939 (0.822-1.072) | 0.939 (0.822-1.072) | |
| GA+GG VS. AA | Y | 6 | 0.386 | 0.154 | 1.000 | 0.908 (0.790-1.043) | 0.907 (0.793-1.037) | |
| GG VS. AA | Overall | 7 | 0.814 | 0.929 | 1.000 | 0.999 (0.656-1.523) | 0.981 (0.649-1.483) | |
| GG VS. AA | MassArray | 3 | 0.371 | 0.743 | 1.000 | 1.143 (0.626-2.090) | 1.103 (0.613-1.986) | |
| GG VS. AA | RT-PCR | 3 | 0.928 | 0.515 | 1.000 | 0.819 (0.439-1.528) | 0.814 (0.438-1.514) | |
| GG VS. AA | H-B | 6 | 0.719 | 0.818 | 1.000 | 0.968 (0.601-1.558) | 0.947 (0.595-1.507) | |
| GG VS. AA | Y | 6 | 0.757 | 0.836 | 1.000 | 1.085 (0.655-1.798) | 1.053 (0.644-1.723) | |
| GG VS. GA+AA | Overall | 7 | 0.815 | 0.976 | 1.000 | 1.013 (0.665-1.543) | 0.994 (0.658-1.502) | |
| GG VS. GA+AA | MassArray | 3 | 0.370 | 0.693 | 1.000 | 1.167 (0.639-2.132) | 1.126 (0.626-2.025) | |
| GG VS. GA+AA | RT-PCR | 3 | 0.916 | 0.540 | 1.000 | 0.829 (0.445-1.547) | 0.824 (0.443-1.531) | |
| GG VS. GA+AA | H-B | 6 | 0.724 | 0.844 | 1.000 | 0.976 (0.606-1.570) | 0.954 (0.600-1.519) | |
| GG VS. GA+AA | Y | 6 | 0.761 | 0.790 | 1.000 | 1.102 (0.665-1.825) | 1.069 (0.654-1.747) | |
| rs1425802 | G VS. A | Overall | 6 | 0.738 | 0.239 | 1.000 | 1.040 (0.974-1.111) | 1.040 (0.974-1.110) |
| A > G | G VS. A | MassArray | 3 | 0.900 | 0.868 | 1.000 | 1.007 (0.930-1.090) | 1.007 (0.930-1.090) |
| G VS. A | RT-PCR | 2 | 0.788 | 0.195 | 1.000 | 1.092 (0.956-1.247) | 1.092 (0.956-1.247) | |
| G VS. A | H-B | 5 | 0.619 | 0.237 | 1.000 | 1.047 (0.970-1.129) | 1.047 (0.970-1.129) | |
| G VS. A | N | 2 | 0.788 | 0.195 | 1.000 | 1.092 (0.956-1.247) | 1.092 (0.956-1.247) | |
| G VS. A | Y | 4 | 0.571 | 0.536 | 1.000 | 1.024 (0.950-1.104) | 1.024 (0.950-1.104) | |
| GA VS. AA | Overall | 6 | 0.578 | 0.943 | 1.000 | 1.004 (0.902-1.117) | 1.004 (0.902-1.117) | |
| GA VS. AA | MassArray | 3 | 0.192 | 0.836 | 1.000 | 1.001 (0.843-1.188) | 1.014 (0.891-1.154) | |
| GA VS. AA | RT-PCR | 2 | 0.524 | 0.946 | 1.000 | 0.993 (0.798-1.234) | 0.993 (0.798-1.234) | |
| GA VS. AA | H-B | 5 | 0.693 | 0.566 | 1.000 | 0.964 (0.852-1.091) | 0.964 (0.852-1.091) | |
| GA VS. AA | N | 2 | 0.524 | 0.946 | 1.000 | 0.993 (0.798-1.234) | 0.993 (0.798-1.234) | |
| GA VS. AA | Y | 4 | 0.336 | 0.905 | 1.000 | 1.003 (0.879-1.145) | 1.007 (0.892-1.139) | |
| GA+GG VS. AA | Overall | 6 | 0.786 | 0.548 | 1.000 | 1.031 (0.933-1.139) | 1.031 (0.934-1.139) | |
| GA+GG VS. AA | MassArray | 3 | 0.352 | 0.837 | 1.000 | 1.012 (0.893-1.147) | 1.013 (0.897-1.144) | |
| GA+GG VS. AA | RT-PCR | 2 | 0.792 | 0.575 | 1.000 | 1.058 (0.869-1.289) | 1.058 (0.868-1.289) | |
| GA+GG VS. AA | H-B | 5 | 0.740 | 0.857 | 1.000 | 1.011 (0.901-1.134) | 1.011 (0.901-1.134) | |
| GA+GG VS. AA | N | 2 | 0.792 | 0.575 | 1.000 | 1.058 (0.869-1.289) | 1.058 (0.868-1.289) | |
| GA+GG VS. AA | Y | 4 | 0.517 | 0.712 | 1.000 | 1.022 (0.911-1.146) | 1.022 (0.911-1.146) | |
| GG VS. AA | Overall | 6 | 0.724 | 0.223 | 1.000 | 1.083 (0.953-1.231) | 1.083 (0.953-1.231) | |
| GG VS. AA | MassArray | 3 | 0.971 | 0.896 | 1.000 | 1.011 (0.862-1.185) | 1.011 (0.862-1.185) | |
| GG VS. AA | RT-PCR | 2 | 0.760 | 0.200 | 1.000 | 1.174 (0.919-1.501) | 1.174 (0.919-1.501) | |
| GG VS. AA | H-B | 5 | 0.632 | 0.187 | 1.000 | 1.104 (0.953-1.280) | 1.104 (0.953-1.280) | |
| GG VS. AA | N | 2 | 0.760 | 0.200 | 1.000 | 1.174 (0.919-1.501) | 1.174 (0.919-1.501) | |
| GG VS. AA | Y | 4 | 0.536 | 0.518 | 1.000 | 1.050 (0.904-1.221) | 1.051 (0.904-1.221) | |
| GG VS. GA+AA | Overall | 6 | 0.391 | 0.184 | 1.000 | 1.081 (0.964-1.212) | 1.078 (0.965-1.206) | |
| GG VS. GA+AA | MassArray | 3 | 0.706 | 0.956 | 1.000 | 1.004 (0.875-1.152) | 1.004 (0.875-1.152) | |
| GG VS. GA+AA | RT-PCR | 2 | 0.484 | 0.135 | 1.000 | 1.180 (0.952-1.464) | 1.179 (0.950-1.463) | |
| GG VS. GA+AA | H-B | 5 | 0.478 | 0.071 | 1.000 | 1.126 (0.990-1.280) | 1.125 (0.990-1.280) | |
| GG VS. GA+AA | N | 2 | 0.484 | 0.135 | 1.000 | 1.180 (0.952-1.464) | 1.179 (0.950-1.463) | |
| GG VS. GA+AA | Y | 4 | 0.284 | 0.515 | 1.000 | 1.055 (0.907-1.228) | 1.044 (0.917-1.189) | |
| rs187115 | G VS. A | Overall | 6 | 0.000 | 0.127 | 1.000 | 1.270 (0.935-1.725) | 1.332 (1.198-1.481) |
| A > G | G VS. A | Asian | 4 | 0.000 | 0.147 | 1.000 | 1.380 (0.893-2.134) | 1.491 (1.310-1.697) |
| G VS. A | Caucasian | 2 | 0.899 | 0.458 | 1.000 | 1.071 (0.893-1.285) | 1.071 (0.893-1.285) | |
| G VS. A | RT-PCR | 2 | 0.580 | 1.762 (1.490-2.083) | 1.765 (1.493-2.087) | |||
| G VS. A | TaqMan | 3 | 0.000 | 0.769 | 1.000 | 1.084 (0.633-1.855) | 1.120 (0.958-1.309) | |
| G VS. A | H-B | 5 | 0.000 | 0.148 | 1.000 | 1.310 (0.909-1.889) | 1.405 (1.248-1.581) | |
| G VS. A | Y | 5 | 0.000 | 0.148 | 1.000 | 1.310 (0.909-1.889) | 1.405 (1.248-1.581) | |
| G VS. A | GBC | 2 | 0.899 | 0.458 | 1.000 | 1.071 (0.893-1.285) | 1.071 (0.893-1.285) | |
| GA VS. AA | Overall | 6 | 0.000 | 0.130 | 1.000 | 1.276 (0.931-1.749) | 1.349 (1.179-1.542) | |
| GA VS. AA | Asian | 4 | 0.000 | 0.141 | 1.000 | 1.391 (0.897-2.158) | 1.487 (1.269-1.743) | |
| GA VS. AA | Caucasian | 2 | 0.885 | 0.633 | 1.000 | 1.063 (0.828-1.364) | 1.063 (0.828-1.364) | |
| GA VS. AA | RT-PCR | 2 | 0.301 | 1.756 (1.416-2.179) | 1.765 (1.436-2.168) | |||
| GA VS. AA | TaqMan | 3 | 0.001 | 0.712 | 1.000 | 1.109 (0.642-1.915) | 1.129 (0.923-1.380) | |
| GA VS. AA | H-B | 5 | 0.000 | 0.147 | 1.000 | 1.317 (0.908-1.909) | 1.407 (1.216-1.629) | |
| GA VS. AA | Y | 5 | 0.000 | 0.147 | 1.000 | 1.317 (0.908-1.909) | 1.407 (1.216-1.629) | |
| GA VS. AA | GBC | 2 | 0.885 | 0.633 | 1.000 | 1.063 (0.828-1.364) | 1.063 (0.828-1.364) | |
| GA+GG VS. AA | Overall | 6 | 0.000 | 0.128 | 1.000 | 1.306 (0.926-1.843) | 1.383 (1.219-1.570) | |
| GA+GG VS. AA | Asian | 4 | 0.000 | 0.143 | 1.000 | 1.436 (0.884-2.331) | 1.550 (1.331-1.805) | |
| GA+GG VS. AA | Caucasian | 2 | 0.883 | 0.527 | 1.000 | 1.076 (0.857-1.351) | 1.076 (0.857-1.351) | |
| GA+GG VS. AA | RT-PCR | 2 | 0.383 | 1.872 (1.536-2.282) | 1.876 (1.540-2.285) | |||
| GA+GG VS. AA | TaqMan | 3 | 0.000 | 0.733 | 1.000 | 1.110 (0.610-2.018) | 1.138 (0.943-1.374) | |
| GA+GG VS. AA | H-B | 5 | 0.000 | 0.147 | 1.000 | 1.353 (0.899-2.035) | 1.457 (1.267-1.675) | |
| GA+GG VS. AA | Y | 5 | 0.000 | 0.147 | 1.000 | 1.353 (0.899-2.035) | 1.457 (1.267-1.675) | |
| GA+GG VS. AA | GBC | 2 | 0.883 | 0.527 | 1.000 | 1.076 (0.857-1.351) | 1.076 (0.857-1.351) | |
| GG VS. AA | Overall | 6 | 0.002 | 0.113 | 1.000 | 1.580 (0.897-2.785) | 1.562 (1.195-2.042) | |
| GG VS. AA | Asian | 4 | 0.007 | 0.130 | 1.000 | 1.889 (0.830-4.299) | 2.181 (1.502-3.169) | |
| GG VS. AA | Caucasian | 2 | 0.995 | 0.565 | 1.000 | 1.118 (0.765-1.634) | 1.118 (0.765-1.634) | |
| GG VS. AA | RT-PCR | 2 | 0.903 | 2.949 (1.827-4.762) | 2.940 (1.815-4.763) | |||
| GG VS. AA | TaqMan | 3 | 0.005 | 0.890 | 1.000 | 1.076 (0.380-3.046) | 1.189 (0.821-1.722) | |
| GG VS. AA | H-B | 5 | 0.003 | 0.133 | 1.000 | 1.699 (0.851-3.392) | 1.849 (1.333-2.566) | |
| GG VS. AA | Y | 5 | 0.003 | 0.133 | 1.000 | 1.699 (0.851-3.392) | 1.849 (1.333-2.566) | |
| GG VS. AA | GBC | 2 | 0.995 | 0.565 | 1.000 | 1.118 (0.765-1.634) | 1.118 (0.765-1.634) | |
| GG VS. GA+AA | Overall | 6 | 0.012 | 0.120 | 1.000 | 1.470 (0.905-2.388) | 1.439 (1.105-1.873) | |
| GG VS. GA+AA | Asian | 4 | 0.023 | 0.142 | 1.000 | 1.718 (0.835-3.533) | 1.907 (1.315-2.765) | |
| GG VS. GA+AA | Caucasian | 2 | 0.982 | 0.633 | 1.000 | 1.094 (0.756-1.585) | 1.094 (0.756-1.585) | |
| GG VS. GA+AA | RT-PCR | 2 | 0.764 | 2.470 (1.537-3.968) | 2.452 (1.520-3.956) | |||
| GG VS. GA+AA | TaqMan | 3 | 0.019 | 0.908 | 1.000 | 1.054 (0.431-2.578) | 1.140 (0.793-1.640) | |
| GG VS. GA+AA | H-B | 5 | 0.017 | 0.137 | 1.000 | 1.572 (0.866-2.855) | 1.663 (1.202-2.302) | |
| GG VS. GA+AA | Y | 5 | 0.017 | 0.137 | 1.000 | 1.572 (0.866-2.855) | 1.663 (1.202-2.302) | |
| GG VS. GA+AA | GBC | 2 | 0.982 | 0.633 | 1.000 | 1.094 (0.756-1.585) | 1.094 (0.756-1.585) | |
| rs353639 | C VS. A | Overall | 4 | 0.192 | 0.280 | 1.000 | 1.077 (0.903-1.285) | 1.080 (0.939-1.243) |
| A > C | C VS. A | Caucasian | 3 | 0.377 | 0.897 | 1.000 | 1.009 (0.859-1.186) | 1.011 (0.861-1.187) |
| C VS. A | TaqMan | 3 | 0.377 | 0.897 | 1.000 | 1.009 (0.859-1.186) | 1.011 (0.861-1.187) | |
| C VS. A | H-B | 2 | 0.068 | 0.593 | 1.000 | 1.106 (0.765-1.598) | 1.107 (0.904-1.356) | |
| C VS. A | P-B | 2 | 0.253 | 0.578 | 1.000 | 1.052 (0.841-1.315) | 1.057 (0.870-1.283) | |
| C VS. A | Y | 3 | 0.119 | 0.598 | 1.000 | 1.044 (0.818-1.332) | 1.046 (0.885-1.236) | |
| C VS. A | GBC | 2 | 0.221 | 0.633 | 1.000 | 1.042 (0.823-1.319) | 1.048 (0.865-1.270) | |
| CA VS. AA | Overall | 4 | 0.430 | 0.442 | 1.000 | 1.071 (0.899-1.276) | 1.071 (0.899-1.275) | |
| CA VS. AA | Caucasian | 3 | 0.718 | 0.924 | 1.000 | 0.990 (0.806-1.215) | 0.990 (0.807-1.215) | |
| CA VS. AA | TaqMan | 3 | 0.718 | 0.924 | 1.000 | 0.990 (0.806-1.215) | 0.990 (0.807-1.215) | |
| CA VS. AA | H-B | 2 | 0.135 | 0.396 | 1.000 | 1.103 (0.762-1.596) | 1.113 (0.869-1.425) | |
| CA VS. AA | P-B | 2 | 0.559 | 0.812 | 1.000 | 1.030 (0.804-1.320) | 1.030 (0.805-1.319) | |
| CA VS. AA | Y | 3 | 0.256 | 0.580 | 1.000 | 1.056 (0.831-1.341) | 1.060 (0.863-1.301) | |
| CA VS. AA | GBC | 2 | 0.441 | 0.945 | 1.000 | 1.008 (0.788-1.290) | 1.009 (0.789-1.290) | |
| CA+CC VS. AA | Overall | 4 | 0.280 | 0.333 | 1.000 | 1.082 (0.897-1.307) | 1.085 (0.919-1.282) | |
| CA+CC VS. AA | Caucasian | 3 | 0.524 | 0.987 | 1.000 | 1.001 (0.825-1.215) | 1.002 (0.825-1.216) | |
| CA+CC VS. AA | TaqMan | 3 | 0.524 | 0.987 | 1.000 | 1.001 (0.825-1.215) | 1.002 (0.825-1.216) | |
| CA+CC VS. AA | H-B | 2 | 0.089 | 0.604 | 1.000 | 1.113 (0.743-1.666) | 1.123 (0.886-1.423) | |
| CA+CC VS. AA | P-B | 2 | 0.377 | 0.680 | 1.000 | 1.050 (0.831-1.326) | 1.050 (0.832-1.326) | |
| CA+CC VS. AA | Y | 3 | 0.162 | 0.562 | 1.000 | 1.053 (0.807-1.374) | 1.060 (0.871-1.291) | |
| CA+CC VS. AA | GBC | 2 | 0.303 | 0.781 | 1.000 | 1.032 (0.813-1.310) | 1.033 (0.820-1.302) | |
| CC VS. AA | Overall | 4 | 0.467 | 0.456 | 1.000 | 1.147 (0.788-1.668) | 1.152 (0.794-1.672) | |
| CC VS. AA | Caucasian | 3 | 0.492 | 0.780 | 1.000 | 1.050 (0.698-1.580) | 1.059 (0.707-1.586) | |
| CC VS. AA | TaqMan | 3 | 0.492 | 0.780 | 1.000 | 1.050 (0.698-1.580) | 1.059 (0.707-1.586) | |
| CC VS. AA | H-B | 2 | 0.222 | 0.628 | 1.000 | 1.188 (0.577-2.448) | 1.155 (0.644-2.072) | |
| CC VS. AA | P-B | 2 | 0.305 | 0.571 | 1.000 | 1.138 (0.686-1.886) | 1.150 (0.709-1.864) | |
| CC VS. AA | Y | 3 | 0.372 | 0.917 | 1.000 | 1.024 (0.636-1.650) | 1.026 (0.637-1.650) | |
| CC VS. AA | GBC | 2 | 0.345 | 0.550 | 1.000 | 1.143 (0.716-1.826) | 1.153 (0.723-1.837) | |
| CC VS.CA+AA | Overall | 4 | 0.572 | 0.490 | 1.000 | 1.134 (0.783-1.642) | 1.138 (0.788-1.644) | |
| CC VS.CA+AA | Caucasian | 3 | 0.561 | 0.776 | 1.000 | 1.052 (0.703-1.574) | 1.060 (0.711-1.578) | |
| CC VS.CA+AA | TaqMan | 3 | 0.561 | 0.776 | 1.000 | 1.052 (0.703-1.574) | 1.060 (0.711-1.578) | |
| CC VS.CA+AA | H-B | 2 | 0.293 | 0.650 | 1.000 | 1.150 (0.626-2.112) | 1.143 (0.642-2.036) | |
| CC VS.CA+AA | P-B | 2 | 0.344 | 0.603 | 1.000 | 1.128 (0.695-1.832) | 1.135 (0.704-1.829) | |
| CC VS.CA+AA | Y | 3 | 0.466 | 0.920 | 1.000 | 1.023 (0.639-1.639) | 1.024 (0.640-1.639) | |
| CC VS.CA+AA | GBC | 2 | 0.408 | 0.559 | 1.000 | 1.139 (0.718-1.808) | 1.147 (0.724-1.816) | |
| rs713330 | T VS. C | Overall | 6 | 0.908 | 0.546 | 1.000 | 0.966 (0.865-1.080) | 0.967 (0.865-1.080) |
| C > T | T VS. C | MassArray | 3 | 0.892 | 0.620 | 1.000 | 0.967 (0.848-1.104) | 0.967 (0.848-1.104) |
| T VS. C | RT-PCR | 2 | 0.661 | 0.409 | 1.000 | 0.905 (0.716-1.145) | 0.906 (0.715-1.146) | |
| T VS. C | H-B | 5 | 0.847 | 0.762 | 1.000 | 0.980 (0.860-1.116) | 0.980 (0.861-1.116) | |
| TC VS. CC | Overall | 6 | 0.874 | 0.772 | 1.000 | 0.982 (0.869-1.111) | 0.982 (0.869-1.110) | |
| TC VS. CC | MassArray | 3 | 0.958 | 0.488 | 1.000 | 0.949 (0.820-1.100) | 0.949 (0.820-1.100) | |
| TC VS. CC | RT-PCR | 2 | 0.428 | 0.889 | 1.000 | 1.020 (0.788-1.319) | 1.019 (0.787-1.319) | |
| TC VS. CC | H-B | 5 | 0.813 | 0.995 | 1.000 | 1.001 (0.867-1.156) | 1.000 (0.866-1.155) | |
| TC+TT VS. CC | Overall | 6 | 0.921 | 0.651 | 1.000 | 0.973 (0.863-1.096) | 0.973 (0.863-1.096) | |
| TC+TT VS. CC | MassArray | 3 | 0.953 | 0.539 | 1.000 | 0.956 (0.829-1.103) | 0.956 (0.829-1.103) | |
| TC+TT VS. CC | RT-PCR | 2 | 0.521 | 0.739 | 1.000 | 0.958 (0.745-1.233) | 0.958 (0.744-1.233) | |
| TC+TT VS. CC | H-B | 5 | 0.874 | 0.882 | 1.000 | 0.989 (0.860-1.139) | 0.989 (0.860-1.139) | |
| TT VS. CC | Overall | 6 | 0.514 | 0.484 | 1.000 | 0.892 (0.563-1.414) | 0.853 (0.547-1.331) | |
| TT VS. CC | MassArray | 3 | 0.526 | 0.807 | 1.000 | 1.059 (0.622-1.806) | 1.068 (0.630-1.809) | |
| TT VS. CC | RT-PCR | 2 | 0.500 | 0.065 | 1.000 | 0.394 (0.130-1.198) | 0.357 (0.119-1.067) | |
| TT VS. CC | H-B | 5 | 0.373 | 0.549 | 1.000 | 0.903 (0.506-1.613) | 0.852 (0.505-1.438) | |
| TT VS. TC+CC | Overall | 6 | 0.505 | 0.492 | 1.000 | 0.897 (0.566-1.421) | 0.856 (0.549-1.335) | |
| TT VS. TC+CC | MassArray | 3 | 0.523 | 0.781 | 1.000 | 1.069 (0.628-1.821) | 1.078 (0.637-1.825) | |
| TT VS. TC+CC | RT-PCR | 2 | 0.485 | 0.064 | 1.000 | 0.396 (0.130-1.201) | 0.357 (0.119-1.064) | |
| TT VS. TC+CC | H-B | 5 | 0.365 | 0.548 | 1.000 | 0.903 (0.502-1.624) | 0.852 (0.505-1.437) |
PH=P-value of heterogeneity test; PZ=P-value of Z test; BC: breast cancer; GBC: Gallbladder cancer; RT-PCR: reverse transcription-polymerase chain reaction; P-B: population-based; H-B: hospital-based; HWE: Hardy Weinberg Equilibrium; Y: studies were conformed to HWE; N: studies were not conformed to HWE.
Methodological quality of the included studies according to the Newcastle-Ottawa Scale
| Variants | Author | Ethnicity | Adequacy | Represent | Selection | Definition | Comparability | Ascertain | Same | Non- | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|
| rs10836347 | Wu | Asian | * | * | NA | * | ** | * | * | * | 8 |
| C>T | Chou | Asian | * | * | NA | * | ** | * | * | * | 8 |
| Wu | Asian | * | * | NA | * | ** | * | * | * | 8 | |
| Jiang | Asian | * | * | NA | * | ** | * | * | * | 8 | |
| Xiao | Asian | * | * | * | * | ** | * | * | * | 9 | |
| Chou | Asian | * | * | NA | NA | ** | * | * | * | 7 | |
| rs11821102 | Wu | Asian | * | * | NA | * | ** | * | * | * | 8 |
| A>G | Chou | Asian | * | * | NA | * | ** | * | * | * | 8 |
| Wu | Asian | * | * | NA | * | ** | * | * | * | 8 | |
| Jiang | Asian | * | * | NA | * | ** | * | * | * | 8 | |
| Xiao | Asian | * | * | * | * | ** | * | * | * | 9 | |
| Chou | Asian | * | * | NA | NA | ** | * | * | * | 7 | |
| rs13347 | Wu | Asian | * | * | NA | * | ** | * | * | * | 8 |
| C>T | Chou | Asian | * | * | NA | * | ** | * | * | * | 8 |
| Wu | Asian | * | * | NA | * | ** | * | * | * | 8 | |
| Tulsyan | Caucasian | * | * | * | * | ** | * | * | * | 9 | |
| Jiang | Asian | * | * | NA | * | ** | * | * | * | 8 | |
| Xiao | Asian | * | * | * | * | ** | * | * | * | 9 | |
| Chou | Asian | * | * | NA | NA | ** | * | * | * | 7 | |
| Sharma | Caucasian | * | * | NA | * | ** | * | * | * | 8 | |
| Yadav | Caucasian | * | * | * | NA | ** | * | * | * | 8 | |
| rs1425802 | Chou | Asian | * | * | NA | * | ** | * | * | * | 8 |
| A>G | Wu | Asian | * | * | NA | * | ** | * | * | * | 8 |
| Jiang | Asian | * | * | NA | * | ** | * | * | * | 8 | |
| Xiao | Asian | * | * | * | * | ** | * | * | * | 8 | |
| Chou | Asian | * | * | NA | NA | ** | * | * | * | 7 | |
| rs187115 | Liu | Asian | * | * | NA | * | ** | * | * | * | 8 |
| A>G | Chou | Asian | * | * | NA | * | ** | * | * | * | 8 |
| Sharma | Caucasian | * | * | NA | * | ** | * | * | * | 8 | |
| Chou | Asian | * | * | NA | NA | ** | * | * | * | 7 | |
| Yadav | Caucasian | * | * | * | NA | ** | * | * | * | 8 | |
| rs353639 | Tulsyan | Caucasian | * | * | * | * | ** | * | * | * | 9 |
| A>C | Sharma | Caucasian | * | * | NA | * | ** | * | * | * | 8 |
| Qiu | Asian | * | * | NA | * | ** | * | * | * | 8 | |
| Yadav | Caucasian | * | * | * | NA | ** | * | * | * | 8 | |
| rs713330 | Chou | Asian | * | * | NA | * | ** | * | * | * | 8 |
| C>T | Wu | Asian | * | * | NA | * | ** | * | * | * | 8 |
| Jiang | Asian | * | * | NA | * | ** | * | * | * | 8 | |
| Xiao | Asian | * | * | * | * | ** | * | * | * | 9 | |
| Chou | Asian | * | * | NA | NA | ** | * | * | * | 7 |
This table identifies ‘high’ quality choices with a ‘star’. A study can be awarded a maximum of 1 star for each numbered item within the Selection and Exposure categories. A maximum of 2 stars can be given for Comparability. *, Yes; NA, not applicable. (http://www.ohri.ca/programs/clinical_epidemiology/oxford.htm).