Literature DB >> 27733633

Molecular Assay Validation Using Genomic Sequence Databases.

John P Dekker1.   

Abstract

Whole-genome sequence databases offer new in silico approaches for designing and validating PCR assays in the clinical microbiology laboratory. An article in this issue of the Journal of Clinical Microbiology (M. J. Jansen van Rensburg, C. Swift, A. J. Cody, C. Jenkins, and M. C. J. Maiden, J Clin Microbiol, 54:2882-2890, 2016, http://dx.doi.org/10.1128/JCM.01522-16) demonstrates the use of publicly available genomic sequence data to evaluate a PCR assay for distinguishing Campylobacter species.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Entities:  

Mesh：

Year:  2016        PMID： 27733633      PMCID： PMC5121371          DOI： 10.1128/JCM.01797-16

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  23 in total

1.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

Review 2.  What are bacterial species?

Authors:  Frederick M Cohan
Journal:  Annu Rev Microbiol       Date:  2002-01-30       Impact factor: 15.500

Review 3.  Next-Generation Sequencing for Infectious Disease Diagnosis and Management: A Report of the Association for Molecular Pathology.

Authors:  Martina I Lefterova; Carlos J Suarez; Niaz Banaei; Benjamin A Pinsky
Journal:  J Mol Diagn       Date:  2015-09-30       Impact factor: 5.568

4.  Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity.

Authors:  P R Hunter; M A Gaston
Journal:  J Clin Microbiol       Date:  1988-11       Impact factor: 5.948

5.  Feasibility of a molecular screening method for detection of Salmonella enterica and Campylobacter jejuni in a routine community-based clinical microbiology laboratory.

Authors:  T Schuurman; R F de Boer; E van Zanten; K R van Slochteren; H R Scheper; B G Dijk-Alberts; A V M Möller; A M D Kooistra-Smid
Journal:  J Clin Microbiol       Date:  2007-09-05       Impact factor: 5.948

6.  Convergence of Campylobacter species: implications for bacterial evolution.

Authors:  Samuel K Sheppard; Noel D McCarthy; Daniel Falush; Martin C J Maiden
Journal:  Science       Date:  2008-04-11       Impact factor: 47.728

7.  Real-time genomic epidemiological evaluation of human Campylobacter isolates by use of whole-genome multilocus sequence typing.

Authors:  Alison J Cody; Noel D McCarthy; Melissa Jansen van Rensburg; Tomide Isinkaye; Stephen D Bentley; Julian Parkhill; Kate E Dingle; Ian C J W Bowler; Keith A Jolley; Martin C J Maiden
Journal:  J Clin Microbiol       Date:  2013-05-22       Impact factor: 5.948

8.  A longitudinal 6-year study of the molecular epidemiology of clinical campylobacter isolates in Oxfordshire, United kingdom.

Authors:  Alison J Cody; Noel M McCarthy; Helen L Wimalarathna; Frances M Colles; Lorraine Clark; Ian C J W Bowler; Martin C J Maiden; Kate E Dingle
Journal:  J Clin Microbiol       Date:  2012-07-18       Impact factor: 5.948

9.  Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain.

Authors:  Keith A Jolley; Carly M Bliss; Julia S Bennett; Holly B Bratcher; Carina Brehony; Frances M Colles; Helen Wimalarathna; Odile B Harrison; Samuel K Sheppard; Alison J Cody; Martin C J Maiden
Journal:  Microbiology (Reading)       Date:  2012-01-27       Impact factor: 2.777

10.  BIGSdb: Scalable analysis of bacterial genome variation at the population level.

Authors:  Keith A Jolley; Martin C J Maiden
Journal:  BMC Bioinformatics       Date:  2010-12-10       Impact factor: 3.169
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.