Literature DB >> 27732780

Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats.

Daniel Petras1,2, Louis-Félix Nothias1,2, Robert A Quinn1,2, Theodore Alexandrov2,3,4, Nuno Bandeira2,5, Amina Bouslimani2, Gabriel Castro-Falcón6, Liangyu Chen1, Tam Dang2,7, Dimitrios J Floros8, Vivian Hook2, Neha Garg9, Nicole Hoffner10, Yike Jiang11, Clifford A Kapono12, Irina Koester6, Rob Knight5,13,14, Christopher A Leber6, Tie-Jun Ling9,15, Tal Luzzatto-Knaan9, Laura-Isobel McCall2, Aaron P McGrath2, Michael J Meehan9, Jonathan K Merritt10, Robert H Mills16, Jamie Morton5, Sonia Podvin2, Ivan Protsyuk3, Trevor Purdy6, Kendall Satterfield16,17, Stephen Searles18,16, Sahil Shah10,19, Sarah Shires2,16, Dana Steffen16, Margot White6, Jelena Todoric17, Robert Tuttle6, Aneta Wojnicz9, Valerie Sapp16, Fernando Vargas11, Jin Yang2, Chao Zhang20,8, Pieter C Dorrestein1,2,14.   

Abstract

The cars we drive, the homes we live in, the restaurants we visit, and the laboratories and offices we work in are all a part of the modern human habitat. Remarkably, little is known about the diversity of chemicals present in these environments and to what degree molecules from our bodies influence the built environment that surrounds us and vice versa. We therefore set out to visualize the chemical diversity of five built human habitats together with their occupants, to provide a snapshot of the various molecules to which humans are exposed on a daily basis. The molecular inventory was obtained through untargeted liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis of samples from each human habitat and from the people that occupy those habitats. Mapping MS-derived data onto 3D models of the environments showed that frequently touched surfaces, such as handles (e.g., door, bicycle), resemble the molecular fingerprint of the human skin more closely than other surfaces that are less frequently in direct contact with humans (e.g., wall, bicycle frame). Approximately 50% of the MS/MS spectra detected were shared between people and the environment. Personal care products, plasticizers, cleaning supplies, food, food additives, and even medications that were found to be a part of the human habitat. The annotations indicate that significant transfer of chemicals takes place between us and our built environment. The workflows applied here will lay the foundation for future studies of molecular distributions in medical, forensic, architectural, space exploration, and environmental applications.

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Year:  2016        PMID: 27732780      PMCID: PMC6326777          DOI: 10.1021/acs.analchem.6b03456

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  19 in total

1.  Detection of Natural Products and Their Producers in Ocean Sediments.

Authors:  Robert N Tuttle; Alyssa M Demko; Nastassia V Patin; Clifford A Kapono; Mohamed S Donia; Pieter Dorrestein; Paul R Jensen
Journal:  Appl Environ Microbiol       Date:  2019-04-04       Impact factor: 4.792

Review 2.  Are microbiome studies ready for hypothesis-driven research?

Authors:  Anupriya Tripathi; Clarisse Marotz; Antonio Gonzalez; Yoshiki Vázquez-Baeza; Se Jin Song; Amina Bouslimani; Daniel McDonald; Qiyun Zhu; Jon G Sanders; Larry Smarr; Pieter C Dorrestein; Rob Knight
Journal:  Curr Opin Microbiol       Date:  2018-07-27       Impact factor: 7.934

3.  3D molecular cartography using LC-MS facilitated by Optimus and 'ili software.

Authors:  Ivan Protsyuk; Alexey V Melnik; Louis-Felix Nothias; Luca Rappez; Prasad Phapale; Alexander A Aksenov; Amina Bouslimani; Sergey Ryazanov; Pieter C Dorrestein; Theodore Alexandrov
Journal:  Nat Protoc       Date:  2017-12-21       Impact factor: 13.491

4.  Chemical Cartography Approaches to Study Trypanosomatid Infection.

Authors:  Danya A Dean; Jacob J Haffner; Mitchelle Katemauswa; Laura-Isobel McCall
Journal:  J Vis Exp       Date:  2022-01-21       Impact factor: 1.355

5.  A multi-laboratory investigation of drug background levels.

Authors:  Edward Sisco; Marcela Najarro
Journal:  Forensic Chem       Date:  2019

6.  Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater.

Authors:  Daniel Petras; Jeremiah J Minich; Lucia B Cancelada; Ralph R Torres; Emily Kunselman; Mingxun Wang; Margot E White; Eric E Allen; Kimberly A Prather; Lihini I Aluwihare; Pieter C Dorrestein
Journal:  Chemosphere       Date:  2021-01-02       Impact factor: 7.086

7.  Reproducible molecular networking of untargeted mass spectrometry data using GNPS.

Authors:  Allegra T Aron; Emily C Gentry; Kerry L McPhail; Louis-Félix Nothias; Mélissa Nothias-Esposito; Amina Bouslimani; Daniel Petras; Julia M Gauglitz; Nicole Sikora; Fernando Vargas; Justin J J van der Hooft; Madeleine Ernst; Kyo Bin Kang; Christine M Aceves; Andrés Mauricio Caraballo-Rodríguez; Irina Koester; Kelly C Weldon; Samuel Bertrand; Catherine Roullier; Kunyang Sun; Richard M Tehan; Cristopher A Boya P; Martin H Christian; Marcelino Gutiérrez; Aldo Moreno Ulloa; Javier Andres Tejeda Mora; Randy Mojica-Flores; Johant Lakey-Beitia; Victor Vásquez-Chaves; Yilue Zhang; Angela I Calderón; Nicole Tayler; Robert A Keyzers; Fidele Tugizimana; Nombuso Ndlovu; Alexander A Aksenov; Alan K Jarmusch; Robin Schmid; Andrew W Truman; Nuno Bandeira; Mingxun Wang; Pieter C Dorrestein
Journal:  Nat Protoc       Date:  2020-05-13       Impact factor: 17.021

8.  Mass Spectrometry Based Molecular 3D-Cartography of Plant Metabolites.

Authors:  Dimitrios J Floros; Daniel Petras; Clifford A Kapono; Alexey V Melnik; Tie-Jun Ling; Rob Knight; Pieter C Dorrestein
Journal:  Front Plant Sci       Date:  2017-03-29       Impact factor: 5.753

9.  Revealing Individual Lifestyles through Mass Spectrometry Imaging of Chemical Compounds in Fingerprints.

Authors:  Paige Hinners; Kelly C O'Neill; Young Jin Lee
Journal:  Sci Rep       Date:  2018-03-26       Impact factor: 4.379

10.  Creating a 3D microbial and chemical snapshot of a human habitat.

Authors:  Clifford A Kapono; James T Morton; Amina Bouslimani; Alexey V Melnik; Kayla Orlinsky; Tal Luzzatto Knaan; Neha Garg; Yoshiki Vázquez-Baeza; Ivan Protsyuk; Stefan Janssen; Qiyun Zhu; Theodore Alexandrov; Larry Smarr; Rob Knight; Pieter C Dorrestein
Journal:  Sci Rep       Date:  2018-02-27       Impact factor: 4.379

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