| Literature DB >> 27730177 |
Esther I Metting1, Johannes C C M In 't Veen2, P N Richard Dekhuijzen3, Ellen van Heijst4, Janwillem W H Kocks1, Jacqueline B Muilwijk-Kroes5, Niels H Chavannes6, Thys van der Molen1.
Abstract
The aim of this study was to develop and explore the diagnostic accuracy of a decision tree derived from a large real-life primary care population. Data from 9297 primary care patients (45% male, mean age 53±17 years) with suspicion of an obstructive pulmonary disease was derived from an asthma/chronic obstructive pulmonary disease (COPD) service where patients were assessed using spirometry, the Asthma Control Questionnaire, the Clinical COPD Questionnaire, history data and medication use. All patients were diagnosed through the Internet by a pulmonologist. The Chi-squared Automatic Interaction Detection method was used to build the decision tree. The tree was externally validated in another real-life primary care population (n=3215). Our tree correctly diagnosed 79% of the asthma patients, 85% of the COPD patients and 32% of the asthma-COPD overlap syndrome (ACOS) patients. External validation showed a comparable pattern (correct: asthma 78%, COPD 83%, ACOS 24%). Our decision tree is considered to be promising because it was based on real-life primary care patients with a specialist's diagnosis. In most patients the diagnosis could be correctly predicted. Predicting ACOS, however, remained a challenge. The total decision tree can be implemented in computer-assisted diagnostic systems for individual patients. A simplified version of this tree can be used in daily clinical practice as a desk tool.Entities:
Year: 2016 PMID: 27730177 PMCID: PMC5005160 DOI: 10.1183/23120541.00077-2015
Source DB: PubMed Journal: ERJ Open Res ISSN: 2312-0541
Overview of the patient characteristics from the derivation and validation databases
| 9297 | 3142+ | |
| COPD | 1716 (18.5) | 555 (17.7) |
| Asthma | 4125 (44.4) | 685 (21.8) |
| Probable asthma | 836 (26.6) | |
| ACOS | 711 (7.6) | 247 (7.9) |
| Other | 2745 (29.5) | 818 (26.0) |
| Male | 4146 (44.6) | 1347 (42.9) |
| Smoked | ||
| Never smoked | 2833 (30.5) | 1182 (37.7) |
| Ever smoked | 6464 (69.5) | 1895 (62.3) |
| Family history | ||
| No or unknown family history | 4525 (48.7) | 2146 (68.3) |
| Positive family history | 4772 (51.3) | 996 (31.7) |
| Allergy | ||
| No allergy | 5542 (58.9) | 932 (29.7) |
| ≥1 allergy | 3755 (39.9) | 1651 (52.5) |
| Missing data | 105 (1.1) | 559 (17.8) |
| Hyperreactivity | ||
| No hyperreactivity | 3105 (33.4) | 2347 (74.7) |
| Hyperreactivity present | 6192 (66.6) | 795 (25.3) |
| Occupational risk | ||
| No occupational risk | 8742 (94.0) | Unknown |
| Occupational risk present | 555 (6.0) | |
| Age years | 53.3±17.1 | 49.4±16.8 |
| Age of onset years | 35.4±23.3 | 36.1±21.6 |
| Total ACQ score | 1.2±0.9 | 1.3±0.9 |
| Total CCQ score | 1.4±0.9 | 1.5±0.9 |
| FEV1 L | 2.9±1.0 | 2.9±1.0 |
| FEV1 % predicted | 89.4±19.3 | 92.1±20.0 |
| FVC L | 3.9±1.1 | 4.0±1.1 |
| FVC % predicted | 101.6±16.5 | 106.7±35.9 |
| FEV1/FVC | 73.0±12.9 | 72.1±13.6 |
| Reversibility % | 6.1±7.5 | 6.9±9.0 |
Data are presented as n, n (%) or mean±sd. COPD: chronic obstructive pulmonary disease; ACOS: asthma–COPD overlap syndrome; ACQ: Asthma Control Questionnaire; CCQ: Clinical COPD Questionnaire; FEV1: forced expiratory volume in 1 s; FVC: forced vital capacity. #: database from the asthma/COPD service used for development of the decision tree (Groningen, the Netherlands); ¶: database from the asthma/COPD service used in the external validation (Rotterdam, the Netherlands); +: total diagnosed was 3141 because one patient could not perform a proper lung function test.
Transformation of continuous predictors to ordinal predictors
| Age years | <55 |
| ≥55 | |
| Age of onset years | <38 |
| ≥38 | |
| BMI kg·m−2 | <22 |
| ≥22 and <36 | |
| ≥36 | |
| Allergy total | No allergy |
| ≥1 allergy | |
| Hyperreactivity | No hyperreactivity |
| ≥1 hyperreactivity | |
| ACQ1 | 0 or 1 |
| ≥2 | |
| ACQ total, ACQ2, ACQ4, ACQ5, ACQ6 | 0 |
| ≥1 | |
| CCQ subscale mental, CCQ1, CCQ2, CCQ4 | 0 |
| ≥1 | |
| CCQ subscale symptoms, CCQ6 | 0 or 1 |
| ≥2 | |
| CCQ7 | <6 |
| ≥6 | |
| FEV1 % predicted | <78 |
| ≥78 and <92 | |
| ≥92 and <102 | |
| ≥102 | |
| FVC % predicted | <81 |
| ≥81 | |
| Reversibility % | <7 |
| ≥7 |
Continuous predictors were transformed to ordinal predictors using minimum descriptive length discretisation. It was not possible to create bins for Asthma Control Questionnaire (ACQ) question 3, Clinical COPD Questionnaire (CCQ) questions 3, 5, 8, 9 or 10, CCQ total or CCQ subscale functional, because of low association with the dependent variable. BMI: body mass index; FEV1: forced expiratory volume in 1 s; FVC: forced vital capacity.
FIGURE 1The most important decision tree concepts. In our analyses we included 9297 patients. The minimum accepted number of patients in an end leaf was set at 94, which is >1% of the patient total.
FIGURE 2Overview of a single “10-fold cross validation”. This was repeated 10 times and each time an error rate was produced. In this study we used the results of the decision tree with the lowest error rate, which was 0.314.
Comparison of individual patient diagnoses given by the pulmonologists and diagnoses predicted with the decision tree
| 355 | 98 | 33 | 711 (7.6) | |||
| 135 | 68 | 59 | 1716 (18.5) | |||
| 162 | 101 | 609 | 4125 (44.4) | |||
| 28 | 128 | 1109 | 2745 (29.5) | |||
| 550 (5.9) | 2038 (21.9) | 4528 (48.7) | 2181 (23.5) | 9297 (100) | ||
Data are presented as n or n (%). ACOS: asthma–COPD overlap syndrome; COPD: chronic obstructive pulmonary disease. #: “diagnosis unclear”, “indication of restriction” or “no disease”. Bold indicates diagnoses that were correctly predicted.
Comparison of individual patient diagnoses given by the pulmonologists from the validation asthma/COPD service and diagnoses predicted with the decision tree
| 151 | 35 | 2 | 247 (7.9) | |||
| 53 | 37 | 6 | 555 (17.7) | |||
| 42 | 32 | 78 | 685 (21.8) | |||
| 11 | 7 | 238 | 836 (26.6) | |||
| 10 | 59 | 336 | 818 (26.0) | |||
| 175 | 708 | 1521 | 737 | 3141 (100.0) | ||
Data are presented as n or n (%). ACOS: asthma–COPD overlap syndrome; COPD: chronic obstructive pulmonary disease. #: “diagnosis unclear”, “indication of restriction” or “no disease”. Bold indicates diagnoses that were correctly predicted.
Branches in the decision tree and an overview of the predicted diagnoses
| Asthma | 1415 (15.2) | 11 (0.8) | 3 (0.2) | 293 (20.7) | ||
| Asthma | 724 (7.8) | 11 (1.5) | 1 (0.1) | 65 (9.0) | ||
| Asthma | 829 (8.9) | 16 (1.9) | 5 (0.6) | 215 (25.9) | ||
| Asthma | 548 (5.9) | 11 (2.0) | 7 (1.3) | 254 (46.4) | ||
| Asthma | 181 (1.9) | 8 (4.4) | 2 (1.1) | 38 (21.0) | ||
| Asthma | 356 (3.8) | 35 (9.8) | 43 (12.2) | 59 (16.6) | ||
| ACOS | 783 (8.4) | 252 (32.2) | 183 (23.4) | 46 (5.9) | ||
| COPD | 1142 (12.3) | 164 (14.4) | 19 (1.7) | 31 (2.7) | ||
| COPD | 257 (2.8) | 26 (10.1) | 11 (4.3) | 17 (6.6) | ||
| COPD | 168 (1.8) | 56 (33.3) | 18 (10.7) | 15 (8.9) | ||
| COPD | 238 (2.6) | 32 (13.4) | 32 (13.4) | 47 (19.7) | ||
| Other# | 1961 (21.2) | 33 (1.7) | 61 (3.1) | 561 (28.6) | ||
| Other# | 695 (7.5) | 6 (0.9) | 5 (0.7) | 323 (46.8) | ||
ACOS: asthma–COPD overlap syndrome; COPD: chronic obstructive pulmonary disease; FEV1: forced expiratory volume in 1 s; FVC: forced vital capacity. #: “diagnosis unclear”, “indication of restriction” or “no disease”. Bold indicates diagnoses that were correctly predicted. Spirometry results were taken after admission of bronchodilation.
FIGURE 3The simplified decision tree derived from the total decision tree gives an overview of the important pathways. COPD: chronic obstructive pulmonary disease; ACOS: asthma–COPD overlap syndrome.
Comparison of individual patient diagnoses given by the pulmonologists and diagnoses predicted with the simplified decision tree
| 278 | 92 | 39 | 711 (7.6) | |||
| 252 | 61 | 66 | 1716 (18.5) | |||
| 183 | 80 | 886 | 4125 (44.4) | |||
| 46 | 110 | 924 | 2745 (29.5) | |||
| 783 (8.4) | 1805 (19.4) | 4053 (43.6) | 2656 (28.6) | 9297 (100) | ||
Data are presented as n or n (%). ACOS: asthma–COPD overlap syndrome; COPD: chronic obstructive pulmonary disease. #: “diagnosis unclear”, “indication of restriction” or “no disease”. Bold indicates diagnoses that were correctly predicted.