| Literature DB >> 27729979 |
Nicole E Kish1, Brian Helmuth2, David S Wethey1.
Abstract
Models of ecological responses to climate change fundamentally assume that predictor variables, which are often measured at large scales, are to some degree diagnostic of the smaller-scale biological processes that ultimately drive patterns of abundance and distribution. Given that organisms respond physiologically to stressors, such as temperature, in highly non-linear ways, small modelling errors in predictor variables can potentially result in failures to predict mortality or severe stress, especially if an organism exists near its physiological limits. As a result, a central challenge facing ecologists, particularly those attempting to forecast future responses to environmental change, is how to develop metrics of forecast model skill (the ability of a model to predict defined events) that are biologically meaningful and reflective of underlying processes. We quantified the skill of four simple models of body temperature (a primary determinant of physiological stress) of an intertidal mussel, Mytilus californianus, using common metrics of model performance, such as root mean square error, as well as forecast verification skill scores developed by the meteorological community. We used a physiologically grounded framework to assess each model's ability to predict optimal, sub-optimal, sub-lethal and lethal physiological responses. Models diverged in their ability to predict different levels of physiological stress when evaluated using skill scores, even though common metrics, such as root mean square error, indicated similar accuracy overall. Results from this study emphasize the importance of grounding assessments of model skill in the context of an organism's physiology and, especially, of considering the implications of false-positive and false-negative errors when forecasting the ecological effects of environmental change.Entities:
Keywords: Biogeography; climate change; ecological forecasting; intertidal zone; model verification; thermal stress
Year: 2016 PMID: 27729979 PMCID: PMC5055285 DOI: 10.1093/conphys/cow038
Source DB: PubMed Journal: Conserv Physiol ISSN: 2051-1434 Impact factor: 3.079
Figure 1:Typical thermal performance curve (TPC). A TPC describes the relationship between body temperature and some metric of physiological performance relevant to fitness; for example, feeding rate. Thermal performance curves are often left (negative)-skewed so that small changes in body temperature above optimal levels can lead to large decreases in performance. Based on physiological data, we divided the TPC for mussels into seven performance categories, which were used to test model skill.
Dates of logger deployment at each site
| Site | Longitude | Latitude | Deployment dates | Number of loggers retrieved |
|---|---|---|---|---|
| Boiler Bay | −124.06 | 44.83 | 8 April 2002–16 May 2009 | 3 |
| Strawberry Hill | −124.11 | 44.25 | 22 May 2000–23 May 2001 | 2–4 |
| 9 April 2002–7 October 2002 | ||||
| 20 Apr 2003–4 May 2004 | ||||
| 29 August 2004–10 June 2010 | ||||
| Bodega Bay | −123.07 | 38.32 | 8 July 2004–8 March 2012 | 3 |
| Pacific Grove | −121.91 | 36.62 | 30 June 2000–6 Dec 2009 | 4 |
| 3 July 2011–23 April 2012 | ||||
| Lompoc | −120.61 | 34.72 | 9 February 2002–3 November 2009 | 2 |
Figure 2:Location of study sites along the west coast of the USA. Biomimic loggers were deployed at five sites spanning ~10° of latitude in Oregon and Washington. See Table 1 for deployment dates.
Bias, root mean squared error and mean absolute error of all models at all sites, for all physiological categories
| Parameter | Boiler Bay | Strawberry Hill | Bodega Bay | Pacific Grove | Lompoc | Average | SD |
|---|---|---|---|---|---|---|---|
| Bias | |||||||
| Air temperature | −4.83 | −4.44 | −2.93 | −3.56 | −6.45 | −4.44 | 1.34 |
| Elvin and Gonor model | −2.51 | −1.02 | 0.93 | −0.34 | −2.66 | −1.12 | 1.51 |
| Multiple regression | −1.53 | −0.84 | −0.91 | −0.86 | 1.41 | −0.55 | 1.13 |
| Biophysical model | −2.21 | −0.76 | 1.95 | 0.69 | −2.78 | −0.62 | 1.97 |
| NOAH 3 cm | −0.21 | −0.52 | 0.91 | −0.04 | −0.92 | ||
| NOAH 5 cm | −3.04 | −2.19 | 0.73 | −1.58 | −2.75 | ||
| Among loggers | 1.6 | 1.27 | −1.81 | −1.07 | −0.21 | ||
| Root mean squared error | |||||||
| Air temperature | 8.17 | 5.55 | 5.25 | 6.11 | 8.83 | 6.78 | 1.62 |
| Elvin and Gonor model | 5.9 | 4.07 | 4.2 | 4.13 | 5.45 | 4.75 | 0.86 |
| Multiple regression | 4.8 | 3.91 | 4.29 | 4.17 | 4.52 | 4.34 | 0.34 |
| Biophysical model | 5.88 | 4.03 | 4.73 | 4.39 | 5.57 | 4.92 | 0.78 |
| NOAH 3 cm | 4.58 | 4.32 | 5.25 | 4.23 | 4.09 | ||
| NOAH 5 cm | 5.7 | 4.55 | 4.22 | 4.41 | 5.04 | ||
| Among loggers | 4.23 | 4.27 | 3.87 | 3.35 | 3.14 | ||
| Mean absolute error | |||||||
| Air temperature | 5.62 | 3.72 | 3.68 | 4.51 | 6.88 | 4.88 | 1.37 |
| Elvin and Gonor model | 3.96 | 2.7 | 3.26 | 3.08 | 3.85 | 3.37 | 0.53 |
| Multiple regression | 3.31 | 2.6 | 3.08 | 3.1 | 3.53 | 3.12 | 0.34 |
| Biophysical model | 3.99 | 2.72 | 3.73 | 3.29 | 4.01 | 3.55 | 0.55 |
| NOAH 3 cm | 3.18 | 3.07 | 3.61 | 3.17 | 3.1 | ||
| NOAH 5 cm | 3.92 | 3.18 | 3.34 | 3.3 | 3.14 | ||
| Among loggers | 2.86 | 3.04 | 2.87 | 2.36 | 2.15 | ||
Forecast verification skill scores for all models at all sites, for all physiological categories
| Score | Boiler Bay | Strawberry Hill | Bodega Bay | Pacific Grove | Lompoc | Average | SD |
|---|---|---|---|---|---|---|---|
| Air temperature | |||||||
| Peirce | 0.14 | 0.23 | 0.07 | 0.09 | 0.02 | 0.11 | 0.08 |
| Heidke | 0.16 | 0.26 | 0.08 | 0.1 | 0.02 | 0.12 | 0.09 |
| Gerrity | NA | NA | 0.22 | 0.05 | 0.07 | 0.11 | 0.09 |
| Elvin and Gonor model | |||||||
| Peirce | 0.29 | 0.37 | 0.3 | 0.33 | 0.24 | 0.31 | 0.05 |
| Heidke | 0.31 | 0.4 | 0.26 | 0.32 | 0.25 | 0.31 | 0.06 |
| Gerrity | NA | NA | 0.3 | 0.23 | 0.19 | 0.24 | 0.06 |
| Simple biophysical model | |||||||
| Peirce | 0.3 | 0.37 | 0.29 | 0.36 | 0.24 | 0.31 | 0.05 |
| Heidke | 0.32 | 0.4 | 0.24 | 0.34 | 0.25 | 0.31 | 0.07 |
| Gerrity | NA | NA | 0.37 | 0.28 | 0.2 | 0.28 | 0.09 |
| Multiple regression | |||||||
| Peirce | 0.42 | 0.41 | 0.23 | 0.32 | 0.35 | 0.34 | 0.08 |
| Heidke | 0.41 | 0.42 | 0.23 | 0.31 | 0.35 | 0.34 | 0.08 |
| Gerrity | NA | NA | 0.27 | 0.17 | 0.27 | 0.24 | 0.06 |
| NOAH 3 cm layer | |||||||
| Peirce | 0.38 | 0.34 | 0.32 | 0.42 | 0.36 | 0.36 | 0.07 |
| Heidke | 0.35 | 0.31 | 0.29 | 0.38 | 0.36 | 0.33 | 0.07 |
| Gerrity | 0.37 | 0.19 | 0.2 | 0.51 | 0.32 | 0.38 | 0.09 |
| NOAH 5 cm layer | |||||||
| Peirce | 0.15 | 0.18 | 0.34 | 0.44 | 0.28 | 0.3 | 0.12 |
| Heidke | 0.18 | 0.19 | 0.29 | 0.43 | 0.29 | 0.29 | 0.11 |
| Gerrity | 0.1 | 0.06 | 0.16 | 0.4 | 0.26 | 0.27 | 0.11 |
| Among loggers | |||||||
| Peirce | 0.52 | 0.43 | 0.38 | 0.51 | 0.56 | 0.46 | 0.07 |
| Heidke | 0.4 | 0.36 | 0.4 | 0.55 | 0.56 | 0.46 | 0.09 |
| Gerrity | 0.36 | 0.27 | 0.19 | 0.51 | 0.62 | 0.51 | 0.11 |
Figure 3:Hit rates for all models at all sites. Categories are as follows: 0 = body temperatures <0°C (low lethal); 1 = 0–10°C (low sub-lethal); 2 = 10–17°C (low sub-optimal); 3 = 17–22°C (optimal); 4 = 22–32°C (high sub-optimal); 5 = 32–38°C (high sub-lethal); and 6 = 38° and above (high lethal). Colours represent different loggers from the same site.
Figure 4:False-alarm ratios for all models at all sites. Category labels are as in Fig. 3.