Literature DB >> 27723727

Drug sensitivity of single cancer cells is predicted by changes in mass accumulation rate.

Mark M Stevens1,2, Cecile L Maire3, Nigel Chou1,4, Mark A Murakami3, David S Knoff3, Yuki Kikuchi1,5, Robert J Kimmerling1,4, Huiyun Liu3, Samer Haidar3, Nicholas L Calistri1, Nathan Cermak6, Selim Olcum1, Nicolas A Cordero3, Ahmed Idbaih7,8, Patrick Y Wen9, David M Weinstock3,10, Keith L Ligon3,10,11,12, Scott R Manalis1,4,13.   

Abstract

Assays that can determine the response of tumor cells to cancer therapeutics could greatly aid the selection of drug regimens for individual patients. However, the utility of current functional assays is limited, and predictive genetic biomarkers are available for only a small fraction of cancer therapies. We found that the single-cell mass accumulation rate (MAR), profiled over many hours with a suspended microchannel resonator, accurately defined the drug sensitivity or resistance of glioblastoma and B-cell acute lymphocytic leukemia cells. MAR revealed heterogeneity in drug sensitivity not only between different tumors, but also within individual tumors and tumor-derived cell lines. MAR measurement predicted drug response using samples as small as 25 μl of peripheral blood while maintaining cell viability and compatibility with downstream characterization. MAR measurement is a promising approach for directly assaying single-cell therapeutic responses and for identifying cellular subpopulations with phenotypic resistance in heterogeneous tumors.

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Year:  2016        PMID: 27723727      PMCID: PMC5142231          DOI: 10.1038/nbt.3697

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  29 in total

1.  Weighing of biomolecules, single cells and single nanoparticles in fluid.

Authors:  Thomas P Burg; Michel Godin; Scott M Knudsen; Wenjiang Shen; Greg Carlson; John S Foster; Ken Babcock; Scott R Manalis
Journal:  Nature       Date:  2007-04-26       Impact factor: 49.962

2.  Molecular determinants of the response of glioblastomas to EGFR kinase inhibitors.

Authors:  Ingo K Mellinghoff; Maria Y Wang; Igor Vivanco; Daphne A Haas-Kogan; Shaojun Zhu; Ederlyn Q Dia; Kan V Lu; Koji Yoshimoto; Julie H Y Huang; Dennis J Chute; Bridget L Riggs; Steve Horvath; Linda M Liau; Webster K Cavenee; P Nagesh Rao; Rameen Beroukhim; Timothy C Peck; Jeffrey C Lee; William R Sellers; David Stokoe; Michael Prados; Timothy F Cloughesy; Charles L Sawyers; Paul S Mischel
Journal:  N Engl J Med       Date:  2005-11-10       Impact factor: 91.245

3.  Tumour evolution inferred by single-cell sequencing.

Authors:  Nicholas Navin; Jude Kendall; Jennifer Troge; Peter Andrews; Linda Rodgers; Jeanne McIndoo; Kerry Cook; Asya Stepansky; Dan Levy; Diane Esposito; Lakshmi Muthuswamy; Alex Krasnitz; W Richard McCombie; James Hicks; Michael Wigler
Journal:  Nature       Date:  2011-03-13       Impact factor: 49.962

4.  Using buoyant mass to measure the growth of single cells.

Authors:  Michel Godin; Francisco Feijó Delgado; Sungmin Son; William H Grover; Andrea K Bryan; Amit Tzur; Paul Jorgensen; Kris Payer; Alan D Grossman; Marc W Kirschner; Scott R Manalis
Journal:  Nat Methods       Date:  2010-04-11       Impact factor: 28.547

5.  Quantification of cell viability and rapid screening anti-cancer drug utilizing nanomechanical fluctuation.

Authors:  Shangquan Wu; Xiaoli Liu; Xiarong Zhou; Xin M Liang; Dayong Gao; Hong Liu; Gang Zhao; Qingchuan Zhang; Xiaoping Wu
Journal:  Biosens Bioelectron       Date:  2015-09-14       Impact factor: 10.618

6.  EGFR variant heterogeneity in glioblastoma resolved through single-nucleus sequencing.

Authors:  Joshua M Francis; Cheng-Zhong Zhang; Cecile L Maire; Joonil Jung; Veronica E Manzo; Viktor A Adalsteinsson; Heather Homer; Sam Haidar; Brendan Blumenstiel; Chandra Sekhar Pedamallu; Azra H Ligon; J Christopher Love; Matthew Meyerson; Keith L Ligon
Journal:  Cancer Discov       Date:  2014-06-03       Impact factor: 39.397

Review 7.  What a tangled web we weave: emerging resistance mechanisms to inhibition of the phosphoinositide 3-kinase pathway.

Authors:  Samuel J Klempner; Andrea P Myers; Lewis C Cantley
Journal:  Cancer Discov       Date:  2013-11-21       Impact factor: 39.397

Review 8.  Circumventing cancer drug resistance in the era of personalized medicine.

Authors:  Levi A Garraway; Pasi A Jänne
Journal:  Cancer Discov       Date:  2012-02-28       Impact factor: 39.397

9.  High-throughput measurement of single-cell growth rates using serial microfluidic mass sensor arrays.

Authors:  Nathan Cermak; Selim Olcum; Francisco Feijó Delgado; Steven C Wasserman; Kristofor R Payer; Mark A Murakami; Scott M Knudsen; Robert J Kimmerling; Mark M Stevens; Yuki Kikuchi; Arzu Sandikci; Masaaki Ogawa; Vincent Agache; François Baléras; David M Weinstock; Scott R Manalis
Journal:  Nat Biotechnol       Date:  2016-09-05       Impact factor: 54.908

10.  Single-cell RNA-seq reveals dynamic paracrine control of cellular variation.

Authors:  Alex K Shalek; Rahul Satija; Joe Shuga; John J Trombetta; Dave Gennert; Diana Lu; Peilin Chen; Rona S Gertner; Jellert T Gaublomme; Nir Yosef; Schraga Schwartz; Brian Fowler; Suzanne Weaver; Jing Wang; Xiaohui Wang; Ruihua Ding; Raktima Raychowdhury; Nir Friedman; Nir Hacohen; Hongkun Park; Andrew P May; Aviv Regev
Journal:  Nature       Date:  2014-06-11       Impact factor: 49.962

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  33 in total

1.  Mammalian cell growth dynamics in mitosis.

Authors:  Teemu P Miettinen; Joon Ho Kang; Lucy F Yang; Scott R Manalis
Journal:  Elife       Date:  2019-05-07       Impact factor: 8.140

2.  Microcantilevers track single-cell mass.

Authors:  Rashid Bashir
Journal:  Nat Biotechnol       Date:  2016-11-08       Impact factor: 54.908

3.  Biophysics: Rapid mass changes measured in cells.

Authors:  David Alsteens; Yves F Dufrêne
Journal:  Nature       Date:  2017-10-25       Impact factor: 49.962

4.  Tumor Interferon Signaling Is Regulated by a lncRNA INCR1 Transcribed from the PD-L1 Locus.

Authors:  Marco Mineo; Shawn M Lyons; Mykola Zdioruk; Niklas von Spreckelsen; Ruben Ferrer-Luna; Hirotaka Ito; Quazim A Alayo; Prakash Kharel; Alexandra Giantini Larsen; William Y Fan; Sophia Auduong; Korneel Grauwet; Carmela Passaro; Jasneet K Khalsa; Khalid Shah; David A Reardon; Keith L Ligon; Rameen Beroukhim; Hiroshi Nakashima; Pavel Ivanov; Paul J Anderson; Sean E Lawler; E Antonio Chiocca
Journal:  Mol Cell       Date:  2020-06-05       Impact factor: 17.970

5.  The Physics of Cancer.

Authors:  Forest M White; Robert A Gatenby; Claudia Fischbach
Journal:  Cancer Res       Date:  2019-04-24       Impact factor: 12.701

Review 6.  Scaling by shrinking: empowering single-cell 'omics' with microfluidic devices.

Authors:  Sanjay M Prakadan; Alex K Shalek; David A Weitz
Journal:  Nat Rev Genet       Date:  2017-04-10       Impact factor: 53.242

Review 7.  Glioblastoma targeted therapy: updated approaches from recent biological insights.

Authors:  M Touat; A Idbaih; M Sanson; K L Ligon
Journal:  Ann Oncol       Date:  2017-07-01       Impact factor: 32.976

Review 8.  Targeting minimal residual disease: a path to cure?

Authors:  Marlise R Luskin; Mark A Murakami; Scott R Manalis; David M Weinstock
Journal:  Nat Rev Cancer       Date:  2018-01-29       Impact factor: 60.716

9.  Functional precision cancer medicine-moving beyond pure genomics.

Authors:  Anthony Letai
Journal:  Nat Med       Date:  2017-09-08       Impact factor: 53.440

10.  High-throughput dynamic BH3 profiling may quickly and accurately predict effective therapies in solid tumors.

Authors:  Patrick D Bhola; Eman Ahmed; Jennifer L Guerriero; Ewa Sicinska; Emily Su; Elizaveta Lavrova; Jing Ni; Otari Chipashvili; Timothy Hagan; Marissa S Pioso; Kelley McQueeney; Kimmie Ng; Andrew J Aguirre; James M Cleary; David Cocozziello; Alaba Sotayo; Jeremy Ryan; Jean J Zhao; Anthony Letai
Journal:  Sci Signal       Date:  2020-06-16       Impact factor: 8.192

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