Literature DB >> 27723431

H3K36 methylation state and associated silencing mechanisms.

Shota Suzuki1, Yota Murakami1, Shinya Takahata1.   

Abstract

Epigenetic marks determine cell fate via numerous reader proteins. H3K36 methylation is a common epigenetic mark that is thought to be associated with the activities of the RNA polymerase 2 C-terminal domain. We discuss a novel silencing mechanism regulated by Set2-dependent H3K36 methylation that involves exosome-dependent RNA processing.

Entities:  

Keywords:  H3K36me; HDAC; Set2; epigenetics; exosome; heterochromatin

Mesh：

Substances：

Year:  2016        PMID： 27723431      PMCID： PMC5279713          DOI： 10.1080/21541264.2016.1246076

Source DB:  PubMed          Journal:  Transcription        ISSN： 2154-1272


  35 in total

1.  RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation.

Authors:  Martin Zofall; Soichiro Yamanaka; Francisca E Reyes-Turcu; Ke Zhang; Chanan Rubin; Shiv I S Grewal
Journal:  Science       Date:  2011-12-01       Impact factor: 47.728

2.  Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin.

Authors:  Bing Li; Madelaine Gogol; Mike Carey; Daeyoup Lee; Chris Seidel; Jerry L Workman
Journal:  Science       Date:  2007-05-18       Impact factor: 47.728

Review 3.  Neuronal regulation of alternative pre-mRNA splicing.

Authors:  Qin Li; Ji-Ann Lee; Douglas L Black
Journal:  Nat Rev Neurosci       Date:  2007-11       Impact factor: 34.870

4.  Histone demethylation by a family of JmjC domain-containing proteins.

Authors:  Yu-ichi Tsukada; Jia Fang; Hediye Erdjument-Bromage; Maria E Warren; Christoph H Borchers; Paul Tempst; Yi Zhang
Journal:  Nature       Date:  2005-12-18       Impact factor: 49.962

5.  Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription.

Authors:  Michael J Carrozza; Bing Li; Laurence Florens; Tamaki Suganuma; Selene K Swanson; Kenneth K Lee; Wei-Jong Shia; Scott Anderson; John Yates; Michael P Washburn; Jerry L Workman
Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

6.  Polycomb PHF19 binds H3K36me3 and recruits PRC2 and demethylase NO66 to embryonic stem cell genes during differentiation.

Authors:  Gerard L Brien; Guillermo Gambero; David J O'Connell; Emilia Jerman; Siobhán A Turner; Chris M Egan; Eiseart J Dunne; Maike C Jurgens; Kieran Wynne; Lianhua Piao; Amanda J Lohan; Neil Ferguson; Xiaobing Shi; Krishna M Sinha; Brendan J Loftus; Gerard Cagney; Adrian P Bracken
Journal:  Nat Struct Mol Biol       Date:  2012-11-18       Impact factor: 15.369

7.  Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases.

Authors:  Johnathan R Whetstine; Amanda Nottke; Fei Lan; Maite Huarte; Sarit Smolikov; Zhongzhou Chen; Eric Spooner; En Li; Gongyi Zhang; Monica Colaiacovo; Yang Shi
Journal:  Cell       Date:  2006-04-06       Impact factor: 41.582

8.  Gene regulation by the lysine demethylase KDM4A in Drosophila.

Authors:  Filip Crona; Olle Dahlberg; Lina E Lundberg; Jan Larsson; Mattias Mannervik
Journal:  Dev Biol       Date:  2012-11-27       Impact factor: 3.582

9.  Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing.

Authors:  Madapura M Pradeepa; Heidi G Sutherland; Jernej Ule; Graeme R Grimes; Wendy A Bickmore
Journal:  PLoS Genet       Date:  2012-05-17       Impact factor: 5.917

10.  Structure of human MRG15 chromo domain and its binding to Lys36-methylated histone H3.

Authors:  Peng Zhang; Jiamu Du; Bingfa Sun; Xianchi Dong; Guoliang Xu; Jinqiu Zhou; Qingqiu Huang; Qun Liu; Quan Hao; Jianping Ding
Journal:  Nucleic Acids Res       Date:  2006-11-28       Impact factor: 16.971
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  7 in total

1.  A demethylation deficient isoform of the lysine demethylase KDM2A interacts with pericentromeric heterochromatin in an HP1a-dependent manner.

Authors:  Dijana Lađinović; Jitka Novotná; Soňa Jakšová; Ivan Raška; Tomáš Vacík
Journal:  Nucleus       Date:  2017-08-17       Impact factor: 4.197

Review 2.  The role of NSD1, NSD2, and NSD3 histone methyltransferases in solid tumors.

Authors:  Iuliia Topchu; Rajendra P Pangeni; Igor Bychkov; Sven A Miller; Evgeny Izumchenko; Jindan Yu; Erica Golemis; John Karanicolas; Yanis Boumber
Journal:  Cell Mol Life Sci       Date:  2022-05-09       Impact factor: 9.207

3.  Disruption of NSD1 in Head and Neck Cancer Promotes Favorable Chemotherapeutic Responses Linked to Hypomethylation.

Authors:  Nam Bui; Justin K Huang; John Paul Shen; Ana Bojorquez-Gomez; Katherine Licon; Kyle S Sanchez; Sean N Tang; Alex N Beckett; Tina Wang; Wei Zhang; Jason F Kreisberg; Trey Ideker
Journal:  Mol Cancer Ther       Date:  2018-04-10       Impact factor: 6.261

4.  Quartet-based inference of cell differentiation trees from ChIP-Seq histone modification data.

Authors:  Nazifa Ahmed Moumi; Badhan Das; Zarin Tasnim Promi; Nishat Anjum Bristy; Md Shamsuzzoha Bayzid
Journal:  PLoS One       Date:  2019-09-26       Impact factor: 3.240

5.  Evidence for an Integrated Gene Repression Mechanism Based on mRNA Isoform Toggling in Human Cells.

Authors:  Ina Hollerer; Juliet C Barker; Victoria Jorgensen; Amy Tresenrider; Claire Dugast-Darzacq; Leon Y Chan; Xavier Darzacq; Robert Tjian; Elçin Ünal; Gloria A Brar
Journal:  G3 (Bethesda)       Date:  2019-04-09       Impact factor: 3.154

Review 6.  Epigenetic Regulation of Pulmonary Arterial Hypertension-Induced Vascular and Right Ventricular Remodeling: New Opportunities?

Authors:  Jordy M M Kocken; Paula A da Costa Martins
Journal:  Int J Mol Sci       Date:  2020-11-24       Impact factor: 5.923

7.  Stress Memory in Seagrasses: First Insight Into the Effects of Thermal Priming and the Role of Epigenetic Modifications.

Authors:  Hung Manh Nguyen; Mikael Kim; Peter J Ralph; Lázaro Marín-Guirao; Mathieu Pernice; Gabriele Procaccini
Journal:  Front Plant Sci       Date:  2020-04-28       Impact factor: 5.753
  7 in total

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