Literature DB >> 27723312

C2-Oxyanion Neighboring Group Participation: Transition State Structure for the Hydroxide-Promoted Hydrolysis of 4-Nitrophenyl α-d-Mannopyranoside.

Gaetano Speciale1, Marco Farren-Dai2, Fahimeh S Shidmoossavee2, Spencer J Williams1, Andrew J Bennet2.   

Abstract

The hydroxide-catalyzed hydrolysis of aryl 1,2-trans-glycosides proceeds through a mechanism involving neighboring group participation by a C2-oxyanion and rate-limiting formation of a 1,2-anhydro sugar (oxirane) intermediate. The transition state for the hydroxide-catalyzed hydrolysis of 4-nitrophenyl α-d-mannopyranoside in aqueous media has been studied by the use of multiple kinetic isotope effect (KIE) measurements in conjunction with ab initio theoretical methods. The experimental KIEs are C1-2H (1.112 ± 0.004), C2-2H (1.045 ± 0.005), anomeric 1-13C (1.026 ± 0.006), C2-13C (0.999 ± 0.005), leaving group oxygen 2-18O (1.040 ± 0.012), and C2-18O (1.044 ± 0.006). The transition state for the hydrolysis reaction was modeled computationally using the experimental KIE values as constraints. Taken together, the reported kinetic isotope effects and computational modeling are consistent with the reaction mechanism involving rate-limiting formation of a transient oxirane intermediate that opens in water to give α-d-mannopyranose. The transition state has significant nucleophilic participation by the C2-alkoxide, an essentially cleaved glycosidic bond, and a slight shortening of the endocyclic C1-O5 bond. The TS is late, consistent with the large, normal C2-18O isotope effect.

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Year:  2016        PMID: 27723312     DOI: 10.1021/jacs.6b07935

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

1.  Synthesis of Conformationally-Locked cis- and trans-Bicyclo[4.4.0] Mono-, Di-, and Trioxadecane Modifications of Galacto- and Glucopyranose; Experimental Limiting 3JH,H Coupling Constants for the Estimation of Carbohydrate Side Chain Populations and Beyond.

Authors:  Harsha Amarasekara; Suresh Dharuman; Takayuki Kato; David Crich
Journal:  J Org Chem       Date:  2018-01-03       Impact factor: 4.354

2.  Contribution of Shape and Charge to the Inhibition of a Family GH99 endo-α-1,2-Mannanase.

Authors:  Marija Petricevic; Lukasz F Sobala; Pearl Z Fernandes; Lluís Raich; Andrew J Thompson; Ganeko Bernardo-Seisdedos; Oscar Millet; Sha Zhu; Matthieu Sollogoub; Jesús Jiménez-Barbero; Carme Rovira; Gideon J Davies; Spencer J Williams
Journal:  J Am Chem Soc       Date:  2017-01-17       Impact factor: 15.419

3.  An Epoxide Intermediate in Glycosidase Catalysis.

Authors:  Lukasz F Sobala; Gaetano Speciale; Sha Zhu; Lluís Raich; Natalia Sannikova; Andrew J Thompson; Zalihe Hakki; Dan Lu; Saeideh Shamsi Kazem Abadi; Andrew R Lewis; Víctor Rojas-Cervellera; Ganeko Bernardo-Seisdedos; Yongmin Zhang; Oscar Millet; Jesús Jiménez-Barbero; Andrew J Bennet; Matthieu Sollogoub; Carme Rovira; Gideon J Davies; Spencer J Williams
Journal:  ACS Cent Sci       Date:  2020-04-16       Impact factor: 14.553

4.  Exploration of Strategies for Mechanism-Based Inhibitor Design for Family GH99 endo-α-1,2-Mannanases.

Authors:  Pearl Z Fernandes; Marija Petricevic; Lukasz Sobala; Gideon J Davies; Spencer J Williams
Journal:  Chemistry       Date:  2018-04-30       Impact factor: 5.236

5.  Design, Synthesis and Biological Evaluation of Nitrate Derivatives of Sauropunol A and B as Potent Vasodilatory Agents.

Authors:  Lu Lu; Xuemin Rao; Rigang Cong; Chenxi Zhang; Zhimei Wang; Jinyi Xu; Genzoh Tanabe; Osamu Muraoka; Xiaoming Wu; Weijia Xie
Journal:  Molecules       Date:  2019-02-06       Impact factor: 4.411

6.  Matching Glycosyl Donor Reactivity to Sulfonate Leaving Group Ability Permits SN2 Glycosylations.

Authors:  Ming-Hua Zhuo; David J Wilbur; Eugene E Kwan; Clay S Bennett
Journal:  J Am Chem Soc       Date:  2019-10-09       Impact factor: 15.419

7.  A Shut-and-Open Case: An Epoxide Intermediate Spotted in the Reaction Coordinate of a Family of Glycoside Hydrolases.

Authors:  David J Vocadlo
Journal:  ACS Cent Sci       Date:  2020-05-06       Impact factor: 14.553

8.  Glycoside hydrolase stabilization of transition state charge: new directions for inhibitor design.

Authors:  Weiwu Ren; Marco Farren-Dai; Natalia Sannikova; Katarzyna Świderek; Yang Wang; Oluwafemi Akintola; Robert Britton; Vicent Moliner; Andrew J Bennet
Journal:  Chem Sci       Date:  2020-09-16       Impact factor: 9.825

  8 in total

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