Literature DB >> 27722558

Open-ended response theory with polarizable embedding: multiphoton absorption in biomolecular systems.

Arnfinn Hykkerud Steindal1, Maarten T P Beerepoot1, Magnus Ringholm1, Nanna Holmgaard List2, Kenneth Ruud1, Jacob Kongsted2, Jógvan Magnus Haugaard Olsen3.   

Abstract

We present the theory and implementation of an open-ended framework for electric response properties at the level of Hartree-Fock and Kohn-Sham density functional theory that includes effects from the molecular environment modeled by the polarizable embedding (PE) model. With this new state-of-the-art multiscale functionality, electric response properties to any order can be calculated for molecules embedded in polarizable atomistic molecular environments ranging from solvents to complex heterogeneous macromolecules such as proteins. In addition, environmental effects on multiphoton absorption (MPA) properties can be studied by evaluating single residues of the response functions. The PE approach includes mutual polarization effects between the quantum and classical parts of the system through induced dipoles that are determined self-consistently with respect to the electronic density. The applicability of our approach is demonstrated by calculating MPA strengths up to four-photon absorption for the green fluorescent protein. We show how the size of the quantum region, as well as the treatment of the border between the quantum and classical regions, is crucial in order to obtain reliable MPA predictions.

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Year:  2016        PMID: 27722558     DOI: 10.1039/c6cp05297e

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  4 in total

1.  Harmonic Infrared and Raman Spectra in Molecular Environments Using the Polarizable Embedding Model.

Authors:  Karen Oda Hjorth Minde Dundas; Maarten T P Beerepoot; Magnus Ringholm; Simen Reine; Radovan Bast; Nanna Holmgaard List; Jacob Kongsted; Kenneth Ruud; Jógvan Magnus Haugaard Olsen
Journal:  J Chem Theory Comput       Date:  2021-05-19       Impact factor: 6.006

Review 2.  Steady-State Linear and Non-linear Optical Spectroscopy of Organic Chromophores and Bio-macromolecules.

Authors:  Marco Marazzi; Hugo Gattuso; Antonio Monari; Xavier Assfeld
Journal:  Front Chem       Date:  2018-04-03       Impact factor: 5.221

3.  Two-Photon Absorption Cross-Sections in Fluorescent Proteins Containing Non-canonical Chromophores Using Polarizable QM/MM.

Authors:  Maria Rossano-Tapia; Jógvan Magnus Haugaard Olsen; Alex Brown
Journal:  Front Mol Biosci       Date:  2020-06-12

4.  What is the Optimal Size of the Quantum Region in Embedding Calculations of Two-Photon Absorption Spectra of Fluorescent Proteins?

Authors:  Dawid Grabarek; Tadeusz Andruniów
Journal:  J Chem Theory Comput       Date:  2020-09-21       Impact factor: 6.006

  4 in total

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