| Literature DB >> 27722196 |
Meenakshi Dauwan1, Jessica J van der Zande2, Edwin van Dellen3, Iris E C Sommer4, Philip Scheltens2, Afina W Lemstra2, Cornelis J Stam5.
Abstract
INTRODUCTION: The aim of this study was to build a random forest classifier to improve the diagnostic accuracy in differentiating dementia with Lewy bodies (DLB) from Alzheimer's disease (AD) and to quantify the relevance of multimodal diagnostic measures, with a focus on electroencephalography (EEG).Entities:
Keywords: Alzheimer's disease; Beta power; Dementia with Lewy bodies; Diagnostic accuracy; EEG; Machine learning; Random forest
Year: 2016 PMID: 27722196 PMCID: PMC5050257 DOI: 10.1016/j.dadm.2016.07.003
Source DB: PubMed Journal: Alzheimers Dement (Amst) ISSN: 2352-8729
Overview selected features
| Feature number | Feature name | Feature number | Feature name |
|---|---|---|---|
| Quantitative EEG | |||
| 1 | Lowest delta power | 36 | Mean PTE alpha1 band |
| 2 | Mean delta power | 37 | Highest PTE alpha1 band |
| 3 | Highest delta power | 38 | Lowest PTE alpha2 band |
| 4 | Lowest theta power | 39 | Mean PTE alpha2 band |
| 5 | Mean theta power | 40 | Highest PTE alpha2 band |
| 6 | Highest theta power | 41 | Lowest PTE beta band |
| 7 | Lowest alpha1 power | 42 | Mean PTE beta band |
| 8 | Mean alpha1 power | 43 | Highest PTE beta band |
| 9 | Highest alpha1 power | ||
| 10 | Lowest alpha2 power | Clinical data | |
| 11 | Mean alpha2 power | 44 | Hallucinations |
| 12 | Highest alpha2 power | 45 | Extrapyramidal signs |
| 13 | Lowest beta power | Neuropsychological data | |
| 14 | Mean beta power | 46 | MMSE score |
| 15 | Highest beta power | 47 | VAT total score |
| 16 | Lowest peak frequency | 48 | TMT-A score |
| 17 | Mean peak frequency | 49 | Digit span forward |
| 18 | Highest peak frequency | 50 | Digit span backward |
| 19 | Theta/alpha ratio | ||
| 20 | MST: highest degree theta band | Neuroimaging (MRI) biomarkers | |
| 21 | MST: leaf number theta band | 51 | MTA score |
| 22 | MST: tree hierarchy theta band | 52 | GCA score |
| 23 | MST: highest degree alpha1 band | 53 | Fazekas score |
| 24 | MST: leaf number alpha1 band | ||
| 25 | MST: tree hierarchy alpha1 band | CSF biomarkers | |
| 26 | MST: highest degree alpha2 band | 54 | Aβ42 |
| 27 | MST: leaf number alpha2 band | 55 | Tau |
| 28 | MST: tree hierarchy alpha2 band | 56 | p-Tau |
| 29 | MST: highest degree beta band | 57 | Tau/Aβ42 ratio |
| 30 | MST: leaf number beta band | ||
| 31 | MST: tree hierarchy beta band | Visual EEG | |
| 32 | Lowest PTE theta band | 58 | Severity of EEG abnormalities |
| 33 | Mean PTE theta band | 59 | Diffuse abnormalities |
| 34 | Highest PTE theta band | 60 | Focal abnormalities |
| 35 | Lowest PTE alpha1 band | 61 | FIRDA |
Abbreviations: FIRDA, frontal intermittent rhythmic delta activity; MST, minimum spanning tree; PTE, phase transfer entropy; MMSE, mini mental state examination; VAT, visual association test; TMT-A, trail making test part A; MTA, medial temporal lobe atrophy; GCA, global cortical atrophy; Aβ42, amyloid-β 1–42; tau, total tau; p-tau, tau phosphorylated at threonine 181.
NOTE. Features 1–43 represent quantitative EEG features. Power is the relative power per frequency band (delta [0–4 Hz], theta [4–8 Hz], alpha1 [8–10 Hz], alpha2 [10–13 Hz], beta [13–30 Hz]). Theta/alpha ratio is calculated as theta/(theta + alpha1 + alpha2). MST highest degree is the maximum degree (i.e., number of links for a given node) within the MST. MST leaf number is the number of nodes in the MST with only one link (i.e., degree). MST tree hierarchy is a measure of optimal network organization. Fazekas score is a measure of white-matter hyperintensities on T2-weighted fluid-attenuated inversion recovery (FLAIR) imaging.
Patient characteristics
| DLB | AD | Control | |
|---|---|---|---|
| N | 66 | 66 | 66 |
| Age, y | 70 (9) | 70 (9) | 70 (7) |
| Sex, female | 14 (21%) | 14 (21%) | 14 (21%) |
| Disease duration, y | 2.9 (2.2) | 3.3 (2.2) | 3.6 (4.8) |
| CNS medication | 16 (24.2%) | 6 (9.1%) | 6 (9.1%) |
| Rivastigmine | 6 (9.1%) | 4 (6.1%) | 1 (1.5%) |
| Haloperidol | 1 (1.5%) | 1 (1.5%) | 1 (1.5%) |
| Clozapine | 2 (3%) | 0 (0%) | 0 (0%) |
| Quetiapine | 2 (3%) | 0 (0%) | 0 (0%) |
| AED | 3 (4.5%) | 1 (1.5%) | 2 (3%) |
| Other CNS medication | 3 (4.5%) | 0 (0%) | 2 (3%) |
| MMSE | 23 (5) (n = 59) | 21 (5) (n = 63) | 28 (1) (n = 66) |
| VAT | 7.9 (3.5) (n = 47) | 5.6 (4.3) (n = 60) | 11.5 (.8) (n = 62) |
| TMT-A | 123 (86) (n = 47) | 87 (63) (n = 54) | 43 (15) (n = 63) |
| Digit span forward | 11.5 (2.5) (n = 50) | 10.5 (3.2) (n = 61) | 12.4 (3.0) (n = 64) |
| Digit span backward | 6.5 (2.8) (n = 49) | 6.6 (3.0) (n = 60) | 9.3 (2.9) (n = 64) |
| Hallucinations | 16 (37.2%) (n = 43) | 3 (5.8%) (n = 52) | 0 (0%) (n = 40) |
| Extrapyramidal signs | 32 (72.7%) (n = 44) | 7 (13.5%) (n = 52) | 4 (9.1%) (n = 44) |
| Bradykinesia | 26 (59.1%) (n = 44) | 2 (3.8%) (n = 52) | 1 (2.3%) (n = 44) |
| Rigidity | 26 (59.1%) (n = 44) | 2 (3.8%) (n = 52) | 3 (6.8%) (n = 44) |
| Tremor | 6 (13.6%) (n = 44) | 4 (7.8%) (n = 51) | 2 (4.5%) (n = 44) |
| RBD | 23 (88.5%) (n = 26) | NA | NA |
| Cognitive fluctuations | 42 (91.3%) (n = 46) | NA | NA |
| CSF | |||
| Aβ42 | 677.7 (236.7) (n = 47) | 503.6 (218.2) (n = 48) | 835.0 (245.0) (n = 37) |
| Tau | 341.4 (187.9) (n = 47) | 601.7 (338.1) (n = 48) | 326.2 (156.2) (n = 37) |
| p-Tau | 56.7 (26.4) (n = 47) | 86.9 (39.7) (n = 48) | 52.1 (19.0) (n = 37) |
| Neuroimaging | |||
| MTA score | 1.0 (0.25–1.5) (n = 45) | 1.5 (1.0–2.0) (n = 59) | 0.5 (0.0–1.0) (n = 59) |
| GCA score | 1.0 (1.0–2.0) (n = 45) | 1.0 (1.0–2.0) (n = 59) | 1.0 (0.0–1.0) (n = 59) |
| Fazekas score | 1.0 (0.0–1.0) (n = 45) | 1.0 (0.0–2.0) (n = 59) | 1.0 (0.0–1.0) (n = 59) |
| Power | |||
| Delta band | 0.42 (0.16) | 0.29 (0.12) | 0.27 (0.11) |
| Theta band | 0.32 (0.12) | 0.22 (0.11) | 0.14 (0.07) |
| Alpha1 band | 0.11 (0.07) | 0.17 (0.10) | 0.23 (0.14) |
| Alpha2 band | 0.05 (0.03) | 0.11 (0.07) | 0.12 (0.07) |
| Beta band | 0.08 (0.04) | 0.16 (0.07) | 0.18 (0.07) |
| Peak frequency | 7.02 (0.91) | 8.06 (1.17) | 8.84 (0.91) |
| Theta/alpha ratio | 0.67 (0.15) | 0.45 (0.18) | 0.30 (0.13) |
Abbreviations: NA, not available; AD, Alzheimer's disease; DLB, dementia with Lewy bodies; MMSE, mini mental state examination; VAT, visual association test; TMT-A, trail making test part A; MTA, medial temporal lobe atrophy; GCA, global cortical atrophy; RBD, REM sleep behavior disorder; Aβ42, amyloid-β 1–42; Tau, total tau; p-Tau, tau phosphorylated at threonine 181; MST, minimum spanning tree; AED, anti-epileptic drugs; CNS, central nerve system.
NOTE. Data are mean (SD), median (interquartile range), or n (%). Disease duration measured as years since onset of complaints. TMT-A scores are presented as time needed to complete the task; higher scores mean worse performance. Diagnoses, including “subjective cognitive decline” for the control group, were made in a consensus meeting after clinical workup; therefore, some control subjects were using medication affecting the central nerve system. Hallucinations were assessed using the NPI. Cognitive fluctuations, extrapyramidal signs, and RBD were qualitatively assessed on their presence or absence at the first clinical presentation. Fazekas score is a measure of white-matter hyperintensities on T2-weighted fluid-attenuated inversion recovery (FLAIR) imaging. Power is the relative power per frequency band (delta [0–4 Hz], theta [4–8 Hz], alpha1 [8–10 Hz], alpha2 [10–13 Hz], and beta [13–30 Hz]). Peak frequency is the frequency with highest power in range between 4 and 13 Hz. Theta/alpha ratio is an index that shows the percentage of theta versus alpha spectral potential during resting state, computed as theta/(theta + alpha1+ alpha2).
Significantly different between DLB and controls.
Significantly different between AD and DLB.
Significantly different between all groups (P < .05).
Significantly different between AD and controls.
Significantly different between the two dementia groups and controls (P < .05).
Classifier results
| Group and feature selection | Accuracy (%) | Sensitivity (%) | Specificity (%) |
|---|---|---|---|
| DLB vs. AD | |||
| All features | 87 | 88 | 86 |
| Only clinical features | 66 | 65 | 67 |
| Clinical features + biomarkers | 71 | 71 | 70 |
| Clinical features + biomarkers + visual EEG | 78 | 76 | 80 |
| Quantitative and visual EEG | 85 | 86 | 84 |
| Only quantitative EEG | 85 | 86 | 85 |
| DLB vs. controls | |||
| All features | 94 | 95 | 92 |
| Only clinical features | 89 | 92 | 86 |
| Clinical features + biomarkers | 86 | 87 | 85 |
| Clinical features + biomarkers + visual EEG | 90 | 87 | 94 |
| Quantitative and visual EEG | 91 | 93 | 89 |
| Only quantitative EEG | 92 | 95 | 89 |
| AD vs. controls | |||
| All features | 91 | 92 | 91 |
| Only clinical features | 90 | 93 | 88 |
| Clinical features + biomarkers | 93 | 94 | 92 |
| Clinical features + biomarkers + visual EEG | 93 | 93 | 92 |
| Quantitative and visual EEG | 63 | 62 | 64 |
| Only quantitative EEG | 62 | 63 | 62 |
Abbreviations: AD, Alzheimer's disease; DLB, dementia with Lewy bodies; EEG, electroencephalography.
NOTE. Clinical features include hallucinations, extrapyramidal signs, and neuropsychological test results (mini mental state [MMSE] score; visual association test (VAT) score; Trail-making-test (TMT)-A score; and digit span forward and backward); Biomarkers include MRI (medial temporal lobe atrophy [MTA] score; global cortical atrophy [GCA] score; Fazekas score), and cerebrospinal fluid (CSF) (amyloid-β 1–42 (Aβ42); total Tau, phosphorylated Tau (p-Tau), and tau to Aβ42 ratio) data.
Fig. 1Example of machine-learning output for discrimination between AD and controls. 1 = subjects on x-axis arranged by diagnosis: 1–66 = AD patients, 67–132 = controls (represented in feature 62 on y-axis); 2 = diagnostic features 1–61 (Table 1); 3 = feature 62: “true” diagnostic labels, set by authors, dividing subjects between AD patients (red) and controls (blue); feature 63: diagnostic labels set by classifier; 4 = variable importance (VIMP) score per feature.
Fig. 2Variable importance scores in the three main classifications using all features. VIMP scores showing the relative importance of different groups of features for discrimination between DLB and AD, DLB and controls, and AD and controls, respectively. Variable importance score (VIMP) on a 0–1 scale; Clinical features: hallucinations, mini mental state examination (MMSE) score; visual association test (VAT) score; trail-making-test (TMT)-A score; Digit span forward and backward. CSF, cerebrospinal fluid.