Literature DB >> 27718363

Structural pliability adjacent to the kinase domain highlights contribution of FAK1 IDRs to cytoskeletal remodeling.

Jaymin J Kathiriya1, Ravi Ramesh Pathak1, Alexandr Bezginov2, Bin Xue3, Vladimir N Uversky4, Elisabeth R M Tillier2, Vrushank Davé5.   

Abstract

Therapeutic protein kinase inhibitors are designed on the basis of kinase structures. Here, we define intrinsically disordered regions (IDRs) in structurally hybrid kinases. We reveal that 65% of kinases have an IDR adjacent to their kinase domain (KD). These IDRs are evolutionarily more conserved than IDRs distant to KDs. Strikingly, 36 kinases have adjacent IDRs extending into their KDs, defining a unique structural and functional subset of the kinome. Functional network analysis of this subset of the kinome uncovered FAK1 as topologically the most connected hub kinase. We identify that KD-flanking IDR of FAK1 is more conserved and undergoes more post-translational modifications than other IDRs. It preferentially interacts with proteins regulating scaffolding and kinase activity, which contribute to cytoskeletal remodeling. In summary, spatially and evolutionarily conserved IDRs in kinases may influence their functions, which can be exploited for targeted therapies in diseases including those that involve aberrant cytoskeletal remodeling. Copyright Â
© 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Evolution of kinases; FAK1 signaling; Hub proteins; Intrinsic disorder in kinases; Network medicine; Protein-protein interaction networks

Mesh:

Substances:

Year:  2016        PMID: 27718363      PMCID: PMC5127739          DOI: 10.1016/j.bbapap.2016.10.002

Source DB:  PubMed          Journal:  Biochim Biophys Acta Proteins Proteom        ISSN: 1570-9639            Impact factor:   3.036


  52 in total

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Review 10.  Evolution of protein kinase signaling from yeast to man.

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  2 in total

1.  Data on evolution of intrinsically disordered regions of the human kinome and contribution of FAK1 IDRs to cytoskeletal remodeling.

Authors:  Jaymin J Kathiriya; Ravi Ramesh Pathak; Alexandr Bezginov; Bin Xue; Vladimir N Uversky; Elisabeth R M Tillier; Vrushank Davé
Journal:  Data Brief       Date:  2016-12-08

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  2 in total

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