Literature DB >> 27718276

The great importance of normalization of LC-MS data for highly-accurate non-targeted metabolomics.

Hajime Mizuno1, Kazuki Ueda1, Yuta Kobayashi1, Naohiro Tsuyama2, Kenichiro Todoroki1, Jun Zhe Min1, Toshimasa Toyo'oka1.   

Abstract

The non-targeted metabolomics analysis of biological samples is very important to understand biological functions and diseases. LC combined with electrospray ionization-based MS has been a powerful tool and widely used for metabolomic analyses. However, the ionization efficiency of electrospray ionization fluctuates for various unexpected reasons such as matrix effects and intraday variations of the instrument performances. To remove these fluctuations, normalization methods have been developed. Such techniques include increasing the sensitivity, separating co-eluting components and normalizing the ionization efficiencies. Normalization techniques allow simultaneously correcting of the ionization efficiencies of the detected metabolite peaks and achieving quantitative non-targeted metabolomics. In this review paper, we focused on these normalization methods for non-targeted metabolomics by LC-MS.
Copyright © 2016 John Wiley & Sons, Ltd.

Mesh:

Year:  2016        PMID: 27718276     DOI: 10.1002/bmc.3864

Source DB:  PubMed          Journal:  Biomed Chromatogr        ISSN: 0269-3879            Impact factor:   1.902


  14 in total

1.  High-resolution gas chromatography/mass spectrometry metabolomics of non-human primate serum.

Authors:  Biswapriya B Misra; Ekong Bassey; Andrew C Bishop; David T Kusel; Laura A Cox; Michael Olivier
Journal:  Rapid Commun Mass Spectrom       Date:  2018-09-15       Impact factor: 2.419

2.  Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping.

Authors:  Christopher Ashwood; Brian Pratt; Brendan X MacLean; Rebekah L Gundry; Nicolle H Packer
Journal:  Analyst       Date:  2019-05-08       Impact factor: 4.616

3.  Generating Novel Aroma Phenotypes Using Commercial Wine Samples to Characterize an F1 Population.

Authors:  Mani Awale; Connie Liu; Misha T Kwasniewski
Journal:  Front Plant Sci       Date:  2022-06-21       Impact factor: 6.627

4.  Nontargeted mass spectrometry of dried blood spots for interrogation of the human circulating metabolome.

Authors:  Casey Ward; Shriram Nallamshetty; Jeramie D Watrous; Eowyn Acres; Tao Long; Ian T Mathews; Sonia Sharma; Susan Cheng; Farhad Imam; Mohit Jain
Journal:  J Mass Spectrom       Date:  2021-05-27       Impact factor: 2.394

Review 5.  Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era.

Authors:  Luca Ambrosino; Chiara Colantuono; Gianfranco Diretto; Alessia Fiore; Maria Luisa Chiusano
Journal:  Plants (Basel)       Date:  2020-05-06

6.  Filtering procedures for untargeted LC-MS metabolomics data.

Authors:  Courtney Schiffman; Lauren Petrick; Kelsi Perttula; Yukiko Yano; Henrik Carlsson; Todd Whitehead; Catherine Metayer; Josie Hayes; Stephen Rappaport; Sandrine Dudoit
Journal:  BMC Bioinformatics       Date:  2019-06-14       Impact factor: 3.169

7.  Real-time health monitoring through urine metabolomics.

Authors:  Ian J Miller; Sean R Peters; Katherine A Overmyer; Brett R Paulson; Michael S Westphall; Joshua J Coon
Journal:  NPJ Digit Med       Date:  2019-11-11

8.  A Case Report of Switching from Specific Vendor-Based to R-Based Pipelines for Untargeted LC-MS Metabolomics.

Authors:  Álvaro Fernández-Ochoa; Rosa Quirantes-Piné; Isabel Borrás-Linares; María de la Luz Cádiz-Gurrea; Marta E Alarcón Riquelme; Carl Brunius; Antonio Segura-Carretero
Journal:  Metabolites       Date:  2020-01-08

9.  Analytical challenges of untargeted GC-MS-based metabolomics and the critical issues in selecting the data processing strategy.

Authors:  Ting-Li Han; Yang Yang; Hua Zhang; Kai P Law
Journal:  F1000Res       Date:  2017-06-22

10.  Discrimination of Adzuki Bean (Vigna angularis) Geographical Origin by Targeted and Non-Targeted Metabolite Profiling with Gas Chromatography Time-of-Flight Mass Spectrometry.

Authors:  Tae Jin Kim; Jeong Gon Park; Soon Kil Ahn; Kil Won Kim; Jaehyuk Choi; Hyun Young Kim; Sun-Hwa Ha; Woo Duck Seo; Jae Kwang Kim
Journal:  Metabolites       Date:  2020-03-17
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