Literature DB >> 27711434

The divide-and-conquer second-order proton propagator method based on nuclear orbital plus molecular orbital theory for the efficient computation of proton binding energies.

Yusuke Tsukamoto1, Yasuhiro Ikabata1, Jonathan Romero2, Andrés Reyes2, Hiromi Nakai3.   

Abstract

An efficient computational method to evaluate the binding energies of many protons in large systems was developed. Proton binding energy is calculated as a corrected nuclear orbital energy using the second-order proton propagator method, which is based on nuclear orbital plus molecular orbital theory. In the present scheme, the divide-and-conquer technique was applied to utilize local molecular orbitals. This use relies on the locality of electronic relaxation after deprotonation and the electron-nucleus correlation. Numerical assessment showed reduction in computational cost without the loss of accuracy. An initial application to model a protein resulted in reasonable binding energies that were in accordance with the electrostatic environment and solvent effects.

Year:  2016        PMID: 27711434     DOI: 10.1039/c6cp03786k

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  2 in total

1.  On the physical interpretation of the nuclear molecular orbital energy.

Authors:  Jorge Charry; Laura Pedraza-González; Andrés Reyes
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

2.  The any particle molecular orbital/molecular mechanics approach.

Authors:  José M Rodas; Johan F Galindo; Adrian E Roitberg; Andrés Reyes
Journal:  J Mol Model       Date:  2019-09-16       Impact factor: 1.810

  2 in total

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