Literature DB >> 27708659

Genetic Diversity, Rather than Cultivar Type, Determines Relative Grain Cd Accumulation in Hybrid Rice.

Liang Sun1, Xiaxu Xu1, Youru Jiang2, Qihong Zhu1, Fei Yang1, Jieqiang Zhou2, Yuanzhu Yang3, Zhiyuan Huang4, Aihong Li5, Lianghui Chen6, Wenbang Tang7, Guoyu Zhang6, Jiurong Wang1, Guoying Xiao1, Daoyou Huang1, Caiyan Chen1.   

Abstract

Cadmium (Cd) is a toxic element, and rice is known to be a leading source of dietary Cd for people who consume rice as their main caloric resource. Hybrid rice has dominated rice production in southern China and has been adopted worldwide. The characteristics of high yield heterosis of rice hybrids makes the public think intuitively that the hybrid rice accumulates more Cd in grain than do inbred cultivars. A detailed understanding of the genetic basis of grain Cd accumulation in hybrids and developing Cd-safe rice are one of the top priorities for hybrid rice breeders at present. In this study, we investigated genetic diversity and grain Cd levels in 617 elite rice hybrids collected from the middle and lower Yangtze River Valley in China and 68 inbred cultivars from around the world. We found that there are large variations in grain Cd accumulation in both the hybrids and their inbred counterparts. However, we found grain Cd levels in the rice hybrids to be similar to the levels in indica rice inbreds, suggesting that the hybrids do not accumulate more Cd than do the inbred rice cultivars. Further analysis revealed that the high heritability of Cd accumulation in the grain and the single indica population structure increases the risk of Cd over-accumulation in hybrid rice. The genetic effects of Cd-related QTLs, which have been identified in related Cd-QTL mapping studies, were also determined in the hybrid rice population. Four QTLs were identified as being associated with the variation in grain Cd levels; three of these loci exhibited obvious indica-japonica differentiations. Our study will provide a better understanding of grain Cd accumulations in hybrid rice, and pave the way toward effective breeding for high-yielding, low grain-Cd hybrids in the future.

Entities:  

Keywords:  QTL; cadmium; genetic diversity; hybrid rice; indica

Year:  2016        PMID: 27708659      PMCID: PMC5030296          DOI: 10.3389/fpls.2016.01407

Source DB:  PubMed          Journal:  Front Plant Sci        ISSN: 1664-462X            Impact factor:   5.753


  41 in total

1.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

2.  Identification of quantitative trait loci across recombinant inbred lines and testcross populations for traits of agronomic importance in rice.

Authors:  Aiqing You; Xinggui Lu; Huajun Jin; Xiang Ren; Kai Liu; Guocai Yang; Haiyuan Yang; Lili Zhu; Guangcun He
Journal:  Genetics       Date:  2005-12-01       Impact factor: 4.562

3.  Genetic composition of yield heterosis in an elite rice hybrid.

Authors:  Gang Zhou; Ying Chen; Wen Yao; Chengjun Zhang; Weibo Xie; Jinping Hua; Yongzhong Xing; Jinghua Xiao; Qifa Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-10       Impact factor: 11.205

4.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

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Authors:  Rufus L Chaney; Philip G Reeves; James A Ryan; Robert W Simmons; Ross M Welch; J Scott Angle
Journal:  Biometals       Date:  2004-10       Impact factor: 2.949

Review 6.  Plant science: the key to preventing slow cadmium poisoning.

Authors:  Stephan Clemens; Mark G M Aarts; Sébastien Thomine; Nathalie Verbruggen
Journal:  Trends Plant Sci       Date:  2012-09-12       Impact factor: 18.313

7.  Genotypic and environmental variation in chromium, cadmium and lead concentrations in rice.

Authors:  Fanrong Zeng; Ying Mao; Wangda Cheng; Feibo Wu; Guoping Zhang
Journal:  Environ Pollut       Date:  2007-10-01       Impact factor: 8.071

8.  Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice.

Authors:  Satoru Ishikawa; Yasuhiro Ishimaru; Masato Igura; Masato Kuramata; Tadashi Abe; Takeshi Senoura; Yoshihiro Hase; Tomohito Arao; Naoko K Nishizawa; Hiromi Nakanishi
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-06       Impact factor: 11.205

9.  Low cadmium (LCD), a novel gene related to cadmium tolerance and accumulation in rice.

Authors:  Hugo Shimo; Yasuhiro Ishimaru; Gynheung An; Takashi Yamakawa; Hiromi Nakanishi; Naoko K Nishizawa
Journal:  J Exp Bot       Date:  2011-09-09       Impact factor: 6.992

10.  Genomic analysis of hybrid rice varieties reveals numerous superior alleles that contribute to heterosis.

Authors:  Xuehui Huang; Shihua Yang; Junyi Gong; Yan Zhao; Qi Feng; Hao Gong; Wenjun Li; Qilin Zhan; Benyi Cheng; Junhui Xia; Neng Chen; Zhongna Hao; Kunyan Liu; Chuanrang Zhu; Tao Huang; Qiang Zhao; Lei Zhang; Danlin Fan; Congcong Zhou; Yiqi Lu; Qijun Weng; Zi-Xuan Wang; Jiayang Li; Bin Han
Journal:  Nat Commun       Date:  2015-02-05       Impact factor: 14.919

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Authors:  Li Tang; Bigang Mao; Yaokui Li; Qiming Lv; LiPing Zhang; Caiyan Chen; Hanjie He; Weiping Wang; Xiongfeng Zeng; Ye Shao; Yinlin Pan; Yuanyi Hu; Yan Peng; Xiqin Fu; Hongqing Li; Shitou Xia; Bingran Zhao
Journal:  Sci Rep       Date:  2017-10-31       Impact factor: 4.379

2.  Genotypic and Environmental Variations in Grain Cadmium and Arsenic Concentrations Among a Panel of High Yielding Rice Cultivars.

Authors:  Guilan Duan; Guosheng Shao; Zhong Tang; Hongping Chen; Boxun Wang; Zhu Tang; Yuping Yang; Yuechuan Liu; Fang-Jie Zhao
Journal:  Rice (N Y)       Date:  2017-03-28       Impact factor: 4.783

3.  Mutation at Different Sites of Metal Transporter Gene OsNramp5 Affects Cd Accumulation and Related Agronomic Traits in Rice (Oryza sativa L.).

Authors:  Tiankang Wang; Yixing Li; Yuefeng Fu; Hongjun Xie; Shufeng Song; Mudan Qiu; Jiong Wen; Muwen Chen; Ge Chen; Yan Tian; Chengxia Li; Dingyang Yuan; Jianlong Wang; Li Li
Journal:  Front Plant Sci       Date:  2019-09-11       Impact factor: 5.753

4.  Validating a segment on chromosome 7 of japonica for establishing low-cadmium accumulating indica rice variety.

Authors:  Kai Wang; Tian-Ze Yan; Shi-Long Xu; Xu Yan; Qun-Feng Zhou; Xin-Hui Zhao; Yan-Feng Li; Zhong-Xiu Wu; Peng Qin; Chen-Jian Fu; Jun Fu; Yan-Biao Zhou; Yuan-Zhu Yang
Journal:  Sci Rep       Date:  2021-03-15       Impact factor: 4.379

5.  Identification of key genes and modules in response to Cadmium stress in different rice varieties and stem nodes by weighted gene co-expression network analysis.

Authors:  Qi Wang; Xiannan Zeng; Qiulai Song; Yu Sun; Yanjiang Feng; Yongcai Lai
Journal:  Sci Rep       Date:  2020-06-12       Impact factor: 4.379

6.  QTL mapping and candidate gene analysis of cadmium accumulation in polished rice by genome-wide association study.

Authors:  Xiaowu Pan; Yongchao Li; Wenqiang Liu; Sanxiong Liu; Jun Min; Haibo Xiong; Zheng Dong; Yonghong Duan; Yaying Yu; Xiaoxiang Li
Journal:  Sci Rep       Date:  2020-07-16       Impact factor: 4.379

  6 in total

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