Literature DB >> 27708356

Spatial genome organization and cognition.

Prashanth Rajarajan1, Sergio Espeso Gil2,3, Kristen J Brennand1, Schahram Akbarian1.   

Abstract

Nonrandom chromosomal conformations, including promoter-enhancer loopings that bypass kilobases or megabases of linear genome, provide a crucial layer of transcriptional regulation and move vast amounts of non-coding sequence into the physical proximity of genes that are important for neurodevelopment, cognition and behaviour. Activity-regulated changes in the neuronal '3D genome' could govern transcriptional mechanisms associated with learning and plasticity, and loop-bound intergenic and intronic non-coding sequences have been implicated in psychiatric and adult-onset neurodegenerative disease. Recent studies have begun to clarify the roles of spatial genome organization in normal and abnormal cognition.

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Year:  2016        PMID: 27708356      PMCID: PMC5503467          DOI: 10.1038/nrn.2016.124

Source DB:  PubMed          Journal:  Nat Rev Neurosci        ISSN: 1471-003X            Impact factor:   34.870


  119 in total

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3.  Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome.

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4.  DLX5 and DLX6 expression is biallelic and not modulated by MeCP2 deficiency.

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Journal:  Am J Hum Genet       Date:  2007-08-02       Impact factor: 11.025

5.  CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons.

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Journal:  Cell Rep       Date:  2012-07-26       Impact factor: 9.423

6.  Maturation-promoting activity of SATB1 in MGE-derived cortical interneurons.

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Journal:  Cell Rep       Date:  2012-11-08       Impact factor: 9.423

7.  Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations.

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Journal:  Nat Genet       Date:  2011-05-15       Impact factor: 38.330

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9.  De novo mutations in epileptic encephalopathies.

Authors:  Andrew S Allen; Samuel F Berkovic; Patrick Cossette; Norman Delanty; Dennis Dlugos; Evan E Eichler; Michael P Epstein; Tracy Glauser; David B Goldstein; Yujun Han; Erin L Heinzen; Yuki Hitomi; Katherine B Howell; Michael R Johnson; Ruben Kuzniecky; Daniel H Lowenstein; Yi-Fan Lu; Maura R Z Madou; Anthony G Marson; Heather C Mefford; Sahar Esmaeeli Nieh; Terence J O'Brien; Ruth Ottman; Slavé Petrovski; Annapurna Poduri; Elizabeth K Ruzzo; Ingrid E Scheffer; Elliott H Sherr; Christopher J Yuskaitis; Bassel Abou-Khalil; Brian K Alldredge; Jocelyn F Bautista; Samuel F Berkovic; Alex Boro; Gregory D Cascino; Damian Consalvo; Patricia Crumrine; Orrin Devinsky; Dennis Dlugos; Michael P Epstein; Miguel Fiol; Nathan B Fountain; Jacqueline French; Daniel Friedman; Eric B Geller; Tracy Glauser; Simon Glynn; Sheryl R Haut; Jean Hayward; Sandra L Helmers; Sucheta Joshi; Andres Kanner; Heidi E Kirsch; Robert C Knowlton; Eric H Kossoff; Rachel Kuperman; Ruben Kuzniecky; Daniel H Lowenstein; Shannon M McGuire; Paul V Motika; Edward J Novotny; Ruth Ottman; Juliann M Paolicchi; Jack M Parent; Kristen Park; Annapurna Poduri; Ingrid E Scheffer; Renée A Shellhaas; Elliott H Sherr; Jerry J Shih; Rani Singh; Joseph Sirven; Michael C Smith; Joseph Sullivan; Liu Lin Thio; Anu Venkat; Eileen P G Vining; Gretchen K Von Allmen; Judith L Weisenberg; Peter Widdess-Walsh; Melodie R Winawer
Journal:  Nature       Date:  2013-08-11       Impact factor: 49.962

10.  Analysis of neonatal brain lacking ATRX or MeCP2 reveals changes in nucleosome density, CTCF binding and chromatin looping.

Authors:  Kristin D Kernohan; Douglas Vernimmen; Gregory B Gloor; Nathalie G Bérubé
Journal:  Nucleic Acids Res       Date:  2014-07-02       Impact factor: 16.971

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  38 in total

1.  Neuronal Chromatin Architecture Regulator CTCF Dictates Remote Memory.

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Review 2.  Gene regulatory mechanisms underlying sex differences in brain development and psychiatric disease.

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Review 3.  Emerging themes in neuronal activity-dependent gene expression.

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Journal:  Mol Cell Neurosci       Date:  2017-12-15       Impact factor: 4.314

Review 4.  Chromatin Regulation of Neuronal Maturation and Plasticity.

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Journal:  Trends Neurosci       Date:  2018-03-09       Impact factor: 13.837

5.  Adolescent Alcohol Exposure Epigenetically Suppresses Amygdala Arc Enhancer RNA Expression to Confer Adult Anxiety Susceptibility.

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Review 6.  Genetics of Schizophrenia: Ready to Translate?

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Review 7.  Application of CRISPR/Cas9 to the study of brain development and neuropsychiatric disease.

Authors:  S K Powell; J Gregory; S Akbarian; K J Brennand
Journal:  Mol Cell Neurosci       Date:  2017-05-23       Impact factor: 4.314

Review 8.  The Arc of cognition: Signaling cascades regulating Arc and implications for cognitive function and disease.

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Review 9.  Epigenome Interactions with Patterned Neuronal Activity.

Authors:  Jillian Belgrad; R Douglas Fields
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10.  Establishment of resveratrol and its derivatives as neuroprotectant against monocrotophos-induced alteration in NIPBL and POU4F1 protein through molecular docking studies.

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