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Literature DB >> 27708327

Democratic databases: science on GitHub.

Jeffrey Perkel.

Abstract

Mesh：

Year: 2016 PMID： 27708327 DOI： 10.1038/538127a

Source DB: PubMed Journal: Nature ISSN： 0028-0836 Impact factor: 49.962

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1 in total

1. A Quick Introduction to Version Control with Git and GitHub.

Authors: John D Blischak; Emily R Davenport; Greg Wilson
Journal: PLoS Comput Biol Date: 2016-01-19 Impact factor: 4.475

1 in total

14 in total

1. Nextflow enables reproducible computational workflows.

Authors: Paolo Di Tommaso; Maria Chatzou; Evan W Floden; Pablo Prieto Barja; Emilio Palumbo; Cedric Notredame
Journal: Nat Biotechnol Date: 2017-04-11 Impact factor: 54.908

2. Correction.

Authors:
Journal: Nature Date: 2016-11-03 Impact factor: 49.962

Review 3. Opportunities and challenges for the use of common controls in sequencing studies.

Authors: Genevieve L Wojcik; Jessica Murphy; Jacob L Edelson; Christopher R Gignoux; Alexander G Ioannidis; Alisa Manning; Manuel A Rivas; Steven Buyske; Audrey E Hendricks
Journal: Nat Rev Genet Date: 2022-05-17 Impact factor: 59.581

4. Integrative biological simulation praxis: Considerations from physics, philosophy, and data/model curation practices.

Authors: Gopal P Sarma; Victor Faundez
Journal: Cell Logist Date: 2017-11-29

5. Datastorr: a workflow and package for delivering successive versions of 'evolving data' directly into R.

Authors: Daniel S Falster; Richard G FitzJohn; Matthew W Pennell; William K Cornwell
Journal: Gigascience Date: 2019-05-01 Impact factor: 6.524

6. Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits.

Authors: Padraig Gleeson; Matteo Cantarelli; Boris Marin; Adrian Quintana; Matt Earnshaw; Sadra Sadeh; Eugenio Piasini; Justas Birgiolas; Robert C Cannon; N Alex Cayco-Gajic; Sharon Crook; Andrew P Davison; Salvador Dura-Bernal; András Ecker; Michael L Hines; Giovanni Idili; Frederic Lanore; Stephen D Larson; William W Lytton; Amitava Majumdar; Robert A McDougal; Subhashini Sivagnanam; Sergio Solinas; Rokas Stanislovas; Sacha J van Albada; Werner van Geit; R Angus Silver
Journal: Neuron Date: 2019-06-11 Impact factor: 17.173

Democratic databases: science on GitHub.

1. A Quick Introduction to Version Control with Git and GitHub.

1. Nextflow enables reproducible computational workflows.

2. Correction.

Review 3. Opportunities and challenges for the use of common controls in sequencing studies.

4. Integrative biological simulation praxis: Considerations from physics, philosophy, and data/model curation practices.

5. Datastorr: a workflow and package for delivering successive versions of 'evolving data' directly into R.

6. Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits.

Review 7. Towards a genomics-informed, real-time, global pathogen surveillance system.

8. Open science saves lives: lessons from the COVID-19 pandemic.

9. A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design.

10. Digital open science-Teaching digital tools for reproducible and transparent research.