Literature DB >> 27702656

A framework to establish credibility of computational models in biology.

Eann A Patterson1, Maurice P Whelan2.   

Abstract

Computational models in biology and biomedical science are often constructed to aid people's understanding of phenomena or to inform decisions with socioeconomic consequences. Model credibility is the willingness of people to trust a model's predictions and is often difficult to establish for computational biology models. A 3 × 3 matrix has been proposed to allow such models to be categorised with respect to their testability and epistemic foundation in order to guide the selection of an appropriate process of validation to supply evidence to establish credibility. Three approaches to validation are identified that can be deployed depending on whether a model is deemed untestable, testable or lies somewhere in between. In the latter two cases, the validation process involves the quantification of uncertainty which is a key output. The issues arising due to the complexity and inherent variability of biological systems are discussed and the creation of 'digital twins' proposed as a means to alleviate the issues and provide a more robust, transparent and traceable route to model credibility and acceptance.
Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Biomedical modelling; Computational biology; Computational models; Credibility; In silico medicine; Validation

Mesh:

Year:  2016        PMID: 27702656     DOI: 10.1016/j.pbiomolbio.2016.08.007

Source DB:  PubMed          Journal:  Prog Biophys Mol Biol        ISSN: 0079-6107            Impact factor:   3.667


  13 in total

1.  Force-Dependent Recruitment from the Myosin Off State Contributes to Length-Dependent Activation.

Authors:  Kenneth S Campbell; Paul M L Janssen; Stuart G Campbell
Journal:  Biophys J       Date:  2018-07-11       Impact factor: 4.033

2.  A systematic approach to the scale separation problem in the development of multiscale models.

Authors:  Pinaki Bhattacharya; Qiao Li; Damien Lacroix; Visakan Kadirkamanathan; Marco Viceconti
Journal:  PLoS One       Date:  2021-05-18       Impact factor: 3.240

3.  Simulation and Synthesis in Medical Imaging.

Authors:  Alejandro F Frangi; Sotirios A Tsaftaris; Jerry L Prince
Journal:  IEEE Trans Med Imaging       Date:  2018-03       Impact factor: 10.048

4.  When Is an In Silico Representation a Digital Twin? A Biopharmaceutical Industry Approach to the Digital Twin Concept.

Authors:  Rui M C Portela; Christos Varsakelis; Anne Richelle; Nikolaos Giannelos; Julia Pence; Sandrine Dessoy; Moritz von Stosch
Journal:  Adv Biochem Eng Biotechnol       Date:  2021       Impact factor: 2.635

Review 5.  Validation and Trustworthiness of Multiscale Models of Cardiac Electrophysiology.

Authors:  Pras Pathmanathan; Richard A Gray
Journal:  Front Physiol       Date:  2018-02-15       Impact factor: 4.566

6.  Developing political-ecological theory: The need for many-task computing.

Authors:  Timothy Haas
Journal:  PLoS One       Date:  2020-11-24       Impact factor: 3.240

7.  Initial state perturbations as a validation method for data-driven fuzzy models of cellular networks.

Authors:  Lidija Magdevska; Miha Mraz; Nikolaj Zimic; Miha Moškon
Journal:  BMC Bioinformatics       Date:  2018-09-21       Impact factor: 3.169

8.  Age-related dataset on the mechanical properties and collagen fibril structure of tendons from a murine model.

Authors:  Kheng Lim Goh; David F Holmes; Yin Hui Lu; Karl E Kadler; Peter P Purslow
Journal:  Sci Data       Date:  2018-07-24       Impact factor: 6.444

9.  A computational model to understand mouse iron physiology and disease.

Authors:  Jignesh H Parmar; Pedro Mendes
Journal:  PLoS Comput Biol       Date:  2019-01-04       Impact factor: 4.475

Review 10.  Credible practice of modeling and simulation in healthcare: ten rules from a multidisciplinary perspective.

Authors:  Ahmet Erdemir; Lealem Mulugeta; Joy P Ku; Andrew Drach; Marc Horner; Tina M Morrison; Grace C Y Peng; Rajanikanth Vadigepalli; William W Lytton; Jerry G Myers
Journal:  J Transl Med       Date:  2020-09-29       Impact factor: 5.531

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