| Literature DB >> 27699082 |
Aijuan Yan1, Gaoyu Cai1, Ningzhen Fu1, Yulan Feng2, Jialan Sun3, Yiming Maimaiti4, Weijun Zhou5, Yi Fu1.
Abstract
Recent research on genome-wide associations has implicated that the serum resistin level and its gene polymorphism are associated with cerebral infarction (CI) morbidity and prognosis, and could thereby regulate CI. This study aimed to investigate the association between the resistin single nucleotide polymorphism (SNP) and the susceptibility to CI in the Chinese Han population. A total of 550 CI patients and 313 healthy controls were genotyped. Nine SNPs of the resistin gene previously shown were sequenced and assessed for an association with CI. The numbers of GG genotype carriers of rs3219175 and rs3486119 in the CI group were significantly higher than those in the control group among the middle-aged group (aged 45-65), at 76% vs 67.9% (P=0.025) and 75.5% vs 67.9% (P=0.031). rs3219175 and rs34861192 were associated with CI in the dominant and superdominant models according to the genetic model analysis (P<0.05). Meanwhile, there was strong linkage disequilibrium among the rs34124816, rs3219175, rs34861192, rs1862513, rs3745367, 180C/G and rs3745369 sites. In a haplotype analysis, the occurrence rate of the haplotype AGGCAGC was 1.97 times (P<0.05) higher in the patient group than in the control group. In addition, the numbers of GG genotype carriers of rs3219175 and rs3486119 in the middle-aged male CI patients and the middle-aged small artery occlusion (SAO) CI patients were higher than those in the control group (P<0.05). In the Chinese Han middle-aged population, the GG gene type carriers of the resistin gene sites rs3219175 and rs34861192 had a high risk for CI onset, especially in middle-aged male patients and SAO CI in all middle-aged patients.Entities:
Keywords: Cerebral infarction; Male; Resistin; Single nucleotide polymorphism; Small artery occlusion type
Year: 2016 PMID: 27699082 PMCID: PMC5036954 DOI: 10.14336/AD.2016.0201
Source DB: PubMed Journal: Aging Dis ISSN: 2152-5250 Impact factor: 6.745
Primer name, primer sequence and PCR length of the 9 sites
| Primer name | Sequence (5’-3’) | PCR length (bp) | |
|---|---|---|---|
| rs3745368 | CGGCTCCAGGTCCGGAGG | TCAGATCCGCTCCATCATCA | 111 |
| rs34124816 | TACAAGTGCTTGTCCGCACC | AGTTTTGCATGCAAGGGTGG | 9 |
| rs3219175 | TCCTCCAGCCCTTACTGTCT | GCTTGGCTAATAAGTCCCTG | 111 |
| rs3219177 | TCAATGAGAGGATCCAGGAG | TGTGCCAGGGATCAGTGAG | 120 |
| rs34861192 | CAGTGCTGTGATCATAAGTC | TACTAAGGAGGCTGACGTG | 96 |
| rs1862513 | AGACAGTAAGGGCTGGAGGA | ACCACCTCCTGACCAGTCT | 107 |
| rs3745367 | ATTCAACCCCAACTCCACTC | GAAGGTTTGGAGTGAGAGCG | 110 |
| -180C/G | CACCACCTCCTGACCAGTCT | CACCACCTCCTGACCAGTCT | 242 |
| rs3745369 | TAGCGTCTCCAAGAGAGTG | AGTTGGAGACCCCATAGGAG | 120 |
General data of CI patients and healthy control subjects (45-65)
| Characteristic | Case | Control | |
|---|---|---|---|
| Number | 366 | 268 | |
| Age | 56.29 ± 5.28 | 55.77 ± 5.70 | 0.258 |
| Men, No (%) | 226 (62) | 131 (49) | 0.005 |
| Triglyceride, mM | 1.96 ± 1.25 | 1.83 ± 1.34 | 0.071 |
| Total cholesterol, mM | 4.70 ± 1.18 | 4.69 ± 1.01 | 0.749 |
| HDL-C, mM | 1.12 ± 0.38 | 1.30 ± 1.38 | 0.001 |
| LDL-C, mM | 3.01 ± 0.96 | 2.84 ± 0.80 | 0.035 |
| Glucose, mM | 6.32 ± 2.73 | 5.53 ± 2.59 | 0.002 |
| SBP, mmHg | 142 ± 20 | 132 ± 16 | 0.001 |
| DBP, mmHg | 83 ± 11 | 80 ± 10 | 0.058 |
| Diabetes, No (%) | 127 (34.7) | 53 (19.8) | 0.001 |
| Hyperlipidemia, No (%) | 215 (58.7) | 138 (51.4) | 0.069 |
| Hypertension, No (%) | 155 (42.3) | 70 (26.1) | 0.001 |
CI: cerebral infarction; HDL-C: high-density lipoprotein cholesterol; LDL-C: low-density lipoprotein cholesterol; SBP: systolic pressure; DBP: diastolic pressure; mean ± standard deviation: assessed by t-test;%percent: assessed by Chi-square test;
P-value: significant difference, P<0.05.
Genotype frequency distribution of 9 resistin gene sites in CI group and control group (45-65)
| SNP | Case | Control | |
|---|---|---|---|
| rs3745368 | |||
| AA | 9 (2.5) | 7 (2.6) | |
| AG | 94 (25.7) | 68 (25.4) | |
| GG | 263 (71.9) | 193 (72.0) | 0.990 |
| rs34124816 | |||
| AA | 293 (80.1) | 224 (83) | |
| AC | 68 (18.6) | 41 (15.3) | |
| CC | 5 (1.4) | 3 (1.1) | 0.527 |
| rs3219175 | |||
| AA | 8 (2.2) | 3 (1.1) | |
| AG | 80 (21.9) | 83 (31.0) | |
| GG | 278 (76.0) | 182 (67.9) | 0.025* |
| rs3219177 | |||
| CC | 347 (94.8) | 250 (93.3) | |
| CT | 18 (4.9) | 18 (6.7) | |
| TT | 1 (0.3) | 0 (0.0) | 0.438 |
| rs34861192 | |||
| AA | 8 (2.2) | 3 (1.1) | |
| AG | 81 (22.1) | 83 (31.0) | |
| GG | 277 (75.7) | 182 (67.9) | 0.031* |
| rs1862513 | |||
| CC | 42 (11.5) | 30 (11.2) | |
| CG | 161 (44.0) | 113 (42.2) | |
| GG | 163 (44.5) | 125 (46.6) | 0.869 |
| rs3745367 | |||
| AA | 48 (13.1) | 34 (12.7) | |
| AG | 178 (48.6) | 130 (48.5) | |
| GG | 140 (38.3) | 104 (38.8) | 0.983 |
| 180C/G | |||
| CC | 161 (44.0) | 125 (46.6) | |
| CG | 163 (44.5) | 113 (42.2) | |
| GG | 42 (11.5) | 42 (11.5) | 0.798 |
| rs3745369 | |||
| CC | 49 (13.4) | 35 (13.1) | |
| CG | 167 (45.6) | 111 (41.4) | |
| GG | 150 (41.0) | 122 (45.5) | 0.501 |
P value: assessed by SHESIS Software.
Relationship between CI and rs3219175, rs34861192 in different genetic models (45-65)
| Locus | Genotype | Adjusted OR(95%CI) | |
|---|---|---|---|
| rs3219175 | |||
| Dominant | AG+AA | 1.00 | |
| GG | 1.49 (1.03-2.17) | 0.036* | |
| Recessive | AA | 1.00 | |
| AG+GG | 0.55 (0.14-2.26) | 0.407 | |
| Overdominant | AG | 1.00 | |
| AA+GG | 1.60 (1.09-2.34) | 0.017* | |
| rs34861192 | |||
| Dominant | AG+AA | 1.00 | |
| GG | 1.46 (1.01-2.13) | 0.046* | |
| Recessive | AA | 1.00 | |
| AG+GG | 0.55 (0.14-2.26) | 0.407 | |
| Overdominant | AG | 1.00 | |
| AA+GG | 1.60 (1.07-2.28) | 0.022* |
P adjusted: assessed by logistic regression; adjusted for age, gender, hypertension, hyperlipidemia and diabetes mellitus.
Figure 1.LD analysis of 9 SNPs (subjects aged 45-65). The LD structure was analyzed by Haploview for a total of 634 alleles from the patients with cerebral infarction and from the controls. There was a strong LD between the rs34124816, rs3219175, rs34861192, rs1862513, rs3745367, 180C/G and rs3745369 (red box) polymorphisms with a standardized disequilibrium coefficient (D’ >0.7).
Association analysis of resistin haplotypes with CI (45-65)
| Haplotype | Case (freq) | Control (freq) | OR (95%CI) | |
|---|---|---|---|---|
| AAACAGG | 80.43 (0.11) | 78.75 (0.15) | 0.055 | 0.72 (0.52-1.01) |
| AGGCAGC | 39.11 (0.05) | 15.09 (0.02) | 0.026* | 1.97 (1.07-3.60) |
| AGGCAGG | 30.81 (0.04) | 19.30 (0.04) | 0.566 | 1.19 (0.66-2.12) |
| AGGGACC | 79.23 (0.11) | 44.52 (0.08) | 0.124 | 1.35 (0.92-1.99) |
| AGGGACG | 34.52 (0.05) | 31.66 (0.06) | 0.361 | 0.79 (0.48-1.30) |
| AGGGGCC | 69.88 (0.10) | 69.62 (0.13) | 0.058 | 0.71 (0.50-1.01) |
| AGGGGCG | 300.27 (0.41) | 217.20 (0.41) | 0.772 | 1.04 (0.82-1.30) |
| CGGCGGC | 67.90 (0.09) | 41.78 (0.08) | 0.332 | 1.22 (0.82-1.83) |
P value: assessed by SHESIS Software. Note: the haplotypes whose frequencies in CI group and control group were both less than 5% were deleted.
Genotype frequency distribution of rs3219175, rs34861192 in CI group and control group for different gender
| SNP | Case(male) | Control(male) | |
|---|---|---|---|
| rs3219175 | |||
| AA | 5 (2.30) | 2 (1.50) | |
| AG | 44 (20.3) | 44 (33.6) | |
| GG | 168 (77.4) | 85 (64.9) | 0.021* |
| rs34861192 | |||
| AA | 5 (2.30) | 2 (1.50) | |
| AG | 45 (20.7) | 44 (33.6) | |
| GG | 167 (77.0) | 85 (64.9) | 0.028* |
| SNP | Case (female) | Control (female) | |
| rs3219175 | |||
| AA | 3 (1.70) | 1 (0.70) | |
| AG | 53 (29.6) | 39 (28.5) | |
| GG | 123 (68.7) | 97 (70.8) | 0.729 |
| rs34861192 | |||
| AA | 3 (1.70) | 1 (0.70) | |
| AG | 53 (29.6) | 39 (28.5) | |
| GG | 123 (68.7) | 97 (70.8) | 0.729 |
P value: assessed by SHESIS Software.
Genotype frequency distribution of rs3219175, rs34861192 in CI group and control group for LAA and SAO
| SNP | Case (SAO) | Control | |
|---|---|---|---|
| rs3219175 | |||
| AA | 7 (2.70) | 3 (1.10) | |
| AG | 55 (21.5) | 83 (31.0) | |
| GG | 194 (75.8) | 182 (67.9) | 0.025* |
| rs34861192 | |||
| AA | 7 (2.70) | 3 (1.10) | |
| AG | 56 (21.9) | 83 (31.0) | |
| GG | 193 (75.4) | 182 (67.9) | 0.032* |
| SNP | Case (LAA) | Control | |
| rs3219175 | |||
| AA | 1 (0.10) | 3 (1.10) | |
| AG | 25 (22.9) | 83 (31.0) | |
| GG | 83 (76.1) | 182 (67.9) | 0.283 |
| rs34861192 | |||
| AA | 1 (0.10) | 3 (1.10) | |
| AG | 25 (22.9) | 83 (31.0) | |
| GG | 83 (76.1) | 182 (67.9) | 0.283 |
P value: assessed by SHESIS Software.