Literature DB >> 27698144

Disorder drives cooperative folding in a multidomain protein.

Dominika T Gruszka1, Carolina A T F Mendonça1, Emanuele Paci1, Fiona Whelan2, Judith Hawkhead2, Jennifer R Potts2, Jane Clarke3.   

Abstract

Many human proteins contain intrinsically disordered regions, and disorder in these proteins can be fundamental to their function-for example, facilitating transient but specific binding, promoting allostery, or allowing efficient posttranslational modification. SasG, a multidomain protein implicated in host colonization and biofilm formation in Staphylococcus aureus, provides another example of how disorder can play an important role. Approximately one-half of the domains in the extracellular repetitive region of SasG are intrinsically unfolded in isolation, but these E domains fold in the context of their neighboring folded G5 domains. We have previously shown that the intrinsic disorder of the E domains mediates long-range cooperativity between nonneighboring G5 domains, allowing SasG to form a long, rod-like, mechanically strong structure. Here, we show that the disorder of the E domains coupled with the remarkable stability of the interdomain interface result in cooperative folding kinetics across long distances. Formation of a small structural nucleus at one end of the molecule results in rapid structure formation over a distance of 10 nm, which is likely to be important for the maintenance of the structural integrity of SasG. Moreover, if this normal folding nucleus is disrupted by mutation, the interdomain interface is sufficiently stable to drive the folding of adjacent E and G5 domains along a parallel folding pathway, thus maintaining cooperative folding.

Entities:  

Keywords:  IDP; cooperativity; parallel pathways; protein engineering; protein folding

Mesh:

Substances:

Year:  2016        PMID: 27698144      PMCID: PMC5081646          DOI: 10.1073/pnas.1608762113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Zinc-dependent mechanical properties of Staphylococcus aureus biofilm-forming surface protein SasG.

Authors:  Cécile Formosa-Dague; Pietro Speziale; Timothy J Foster; Joan A Geoghegan; Yves F Dufrêne
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-29       Impact factor: 11.205

2.  The notch ankyrin domain folds via a discrete, centralized pathway.

Authors:  Christina Marchetti Bradley; Doug Barrick
Journal:  Structure       Date:  2006-08       Impact factor: 5.006

3.  Contact order, transition state placement and the refolding rates of single domain proteins.

Authors:  K W Plaxco; K T Simons; D Baker
Journal:  J Mol Biol       Date:  1998-04-10       Impact factor: 5.469

4.  Allostery within a transcription coactivator is predominantly mediated through dissociation rate constants.

Authors:  Sarah L Shammas; Alexandra J Travis; Jane Clarke
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-04       Impact factor: 11.205

5.  Sequential unfolding of ankyrin repeats in tumor suppressor p16.

Authors:  Kit S Tang; Alan R Fersht; Laura S Itzhaki
Journal:  Structure       Date:  2003-01       Impact factor: 5.006

6.  Prepaying the entropic cost for allosteric regulation in KIX.

Authors:  Sean M Law; Jessica K Gagnon; Anna K Mapp; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-07       Impact factor: 11.205

7.  Prediction and functional analysis of native disorder in proteins from the three kingdoms of life.

Authors:  J J Ward; J S Sodhi; L J McGuffin; B F Buxton; D T Jones
Journal:  J Mol Biol       Date:  2004-03-26       Impact factor: 5.469

8.  Staphylococcal biofilm-forming protein has a contiguous rod-like structure.

Authors:  Dominika T Gruszka; Justyna A Wojdyla; Richard J Bingham; Johan P Turkenburg; Iain W Manfield; Annette Steward; Andrew P Leech; Joan A Geoghegan; Timothy J Foster; Jane Clarke; Jennifer R Potts
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-09       Impact factor: 11.205

9.  Cooperative folding of intrinsically disordered domains drives assembly of a strong elongated protein.

Authors:  Dominika T Gruszka; Fiona Whelan; Oliver E Farrance; Herman K H Fung; Emanuele Paci; Cy M Jeffries; Dmitri I Svergun; Clair Baldock; Christoph G Baumann; David J Brockwell; Jennifer R Potts; Jane Clarke
Journal:  Nat Commun       Date:  2015-06-01       Impact factor: 14.919

10.  Probing a moving target with a plastic unfolding intermediate of an ankyrin-repeat protein.

Authors:  Nicolas D Werbeck; Laura S Itzhaki
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-02       Impact factor: 11.205

View more
  8 in total

Review 1.  Staphylococcal Biofilms.

Authors:  Michael Otto
Journal:  Microbiol Spectr       Date:  2018-08

2.  The streptococcal multidomain fibrillar adhesin CshA has an elongated polymeric architecture.

Authors:  Catherine R Back; Victoria A Higman; Kristian Le Vay; Viren V Patel; Alice E Parnell; Daniel Frankel; Howard F Jenkinson; Steven G Burston; Matthew P Crump; Angela H Nobbs; Paul R Race
Journal:  J Biol Chem       Date:  2020-03-30       Impact factor: 5.157

Review 3.  Self-Referential Encoding on Modules of Anticodon Pairs-Roots of the Biological Flow System.

Authors:  Romeu Cardoso Guimarães
Journal:  Life (Basel)       Date:  2017-04-06

4.  Genus trace reveals the topological complexity and domain structure of biomolecules.

Authors:  Sebastian Zając; Cody Geary; Ebbe Sloth Andersen; Pawel Dabrowski-Tumanski; Joanna I Sulkowska; Piotr Sułkowski
Journal:  Sci Rep       Date:  2018-12-03       Impact factor: 4.379

Review 5.  Deep learning in prediction of intrinsic disorder in proteins.

Authors:  Bi Zhao; Lukasz Kurgan
Journal:  Comput Struct Biotechnol J       Date:  2022-03-08       Impact factor: 7.271

6.  First Principles Calculation of Protein-Protein Dimer Affinities of ALS-Associated SOD1 Mutants.

Authors:  Shawn C C Hsueh; Mark Nijland; Xubiao Peng; Benjamin Hilton; Steven S Plotkin
Journal:  Front Mol Biosci       Date:  2022-03-24

Review 7.  On the Effects of Disordered Tails, Supertertiary Structure and Quinary Interactions on the Folding and Function of Protein Domains.

Authors:  Francesca Malagrinò; Valeria Pennacchietti; Daniele Santorelli; Livia Pagano; Caterina Nardella; Awa Diop; Angelo Toto; Stefano Gianni
Journal:  Biomolecules       Date:  2022-01-26

8.  Dissecting the Functional Contributions of the Intrinsically Disordered C-terminal Tail of Bacillus subtilis FtsZ.

Authors:  Megan C Cohan; Anna M P Eddelbuettel; Petra A Levin; Rohit V Pappu
Journal:  J Mol Biol       Date:  2020-03-18       Impact factor: 5.469

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.