Literature DB >> 27696835

Effect of H-Bonding on Order Amplification in the Growth of a Supramolecular Polymer in Water.

Matteo Garzoni1, Matthew B Baker2,3, Christianus M A Leenders2, Ilja K Voets2, Lorenzo Albertazzi4, Anja R A Palmans2, E W Meijer2, Giovanni M Pavan1.   

Abstract

While a great deal of knowledge on the roles of hydrogen bonding and hydrophobicity in proteins has resulted in the creation of rationally designed and functional peptidic structures, the roles of these forces on purely synthetic supramolecular architectures in water have proven difficult to ascertain. Focusing on a 1,3,5-benzenetricarboxamide (BTA)-based supramolecular polymer, we have designed a molecular modeling strategy to dissect the energetic contributions involved in the self-assembly (electrostatic, hydrophobic, etc.) upon growth of both ordered BTA stacks and random BTA aggregates. Utilizing this set of simulations, we have unraveled the cooperative mechanism for polymer growth, where a critical size must be reached in the aggregates before emergence and amplification of order into the experimentally observed fibers. Furthermore, we have found that the formation of ordered fibers is favored over disordered aggregates solely on the basis of electrostatic interactions. Detailed analysis of the simulation data suggests that H-bonding is a major source of this stabilization energy. Experimental and computational comparison with a newly synthesized 1,3,5-benzenetricarboxyester (BTE) derivative, lacking the ability to form the H-bonding network, demonstrated that this BTE variant is also capable of fiber formation, albeit at a reduced persistence length. This work provides unambiguous evidence for the key 1D driving force of hydrogen bonding in enhancing the persistency of monomer stacking and amplifying the level of order into the growing supramolecular polymer in water. Our computational approach provides an important relationship directly linking the structure of the monomer to the structure and properties of the supramolecular polymer.

Entities:  

Year:  2016        PMID: 27696835     DOI: 10.1021/jacs.6b07530

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Into the Dynamics of a Supramolecular Polymer at Submolecular Resolution.

Authors:  Davide Bochicchio; Matteo Salvalaglio; Giovanni M Pavan
Journal:  Nat Commun       Date:  2017-07-27       Impact factor: 14.919

2.  Stacks of Azobenzene Stars: Self-Assembly Scenario and Stabilising Forces Quantified in Computer Modelling.

Authors:  Vladyslav Savchenko; Markus Koch; Aleksander S Pavlov; Marina Saphiannikova; Olga Guskova
Journal:  Molecules       Date:  2019-11-30       Impact factor: 4.411

3.  How the Choice of Force-Field Affects the Stability and Self-Assembly Process of Supramolecular CTA Fibers.

Authors:  Tomasz K Piskorz; A H de Vries; Jan H van Esch
Journal:  J Chem Theory Comput       Date:  2021-11-23       Impact factor: 6.006

4.  Dynamic Control of a Multistate Chiral Supramolecular Polymer in Water.

Authors:  Fan Xu; Stefano Crespi; Gianni Pacella; Youxin Fu; Marc C A Stuart; Qi Zhang; Giuseppe Portale; Ben L Feringa
Journal:  J Am Chem Soc       Date:  2022-03-27       Impact factor: 15.419

5.  Molecular communications in complex systems of dynamic supramolecular polymers.

Authors:  Martina Crippa; Claudio Perego; Anna L de Marco; Giovanni M Pavan
Journal:  Nat Commun       Date:  2022-04-20       Impact factor: 17.694

6.  Biomimetic temporal self-assembly via fuel-driven controlled supramolecular polymerization.

Authors:  Ananya Mishra; Divya B Korlepara; Mohit Kumar; Ankit Jain; Narendra Jonnalagadda; Karteek K Bejagam; Sundaram Balasubramanian; Subi J George
Journal:  Nat Commun       Date:  2018-03-30       Impact factor: 14.919

7.  Dual self-assembly of supramolecular peptide nanotubes to provide stabilisation in water.

Authors:  Julia Y Rho; Henry Cox; Edward D H Mansfield; Sean H Ellacott; Raoul Peltier; Johannes C Brendel; Matthias Hartlieb; Thomas A Waigh; Sébastien Perrier
Journal:  Nat Commun       Date:  2019-10-17       Impact factor: 14.919

8.  Thermodynamic insights into the entropically driven self-assembly of amphiphilic dyes in water.

Authors:  Pradeep P N Syamala; Bartolome Soberats; Daniel Görl; Stephan Gekle; Frank Würthner
Journal:  Chem Sci       Date:  2019-08-20       Impact factor: 9.825

9.  Cyclic Photoisomerization of Azobenzene in Atomistic Simulations: Modeling the Effect of Light on Columnar Aggregates of Azo Stars.

Authors:  Markus Koch; Marina Saphiannikova; Olga Guskova
Journal:  Molecules       Date:  2021-12-18       Impact factor: 4.411

10.  Columnar Aggregates of Azobenzene Stars: Exploring Intermolecular Interactions, Structure, and Stability in Atomistic Simulations.

Authors:  Markus Koch; Marina Saphiannikova; Olga Guskova
Journal:  Molecules       Date:  2021-12-15       Impact factor: 4.411

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