| Literature DB >> 27696180 |
Satu Oristo1, Maria Rönnqvist2,3, Mika Aho4, Ava Sovijärvi4, Tuula Hannila-Handelberg4, Ari Hörman5, Simo Nikkari4, Paula M Kinnunen3,4, Leena Maunula2.
Abstract
This study investigated the presence of norovirus and adenovirus, especially enteric adenovirus, on the environmental surfaces (n = 481) and military conscripts' hands (n = 109) in two Finnish garrisons (A and B) in 2013 and 2014. A questionnaire study was conducted to reveal possible correlations between viral findings on the conscripts' hands and their acute gastroenteritis symptoms. In addition to the swab samples, 14 fecal samples were obtained for viral analysis. In total, norovirus was present in 9.0 % of the surface swabs in 2013, whereas enteric adenovirus was present in 0.0 % and non-enteric adenovirus in 9.4 %. In the same year, 2.6 % of the hand swabs contained norovirus, 2.6 % enteric adenovirus, and 40.3 % non-enteric adenovirus. Norovirus GI.6 was continually detected on the surfaces of garrison A, and identical virus was detected in some of the fecal samples. In garrison B, two slightly different norovirus GII.4 strains were present on the surfaces. The questionnaires revealed no recent acute gastroenteritis cases in garrison A, but in garrison B, where the norovirus-positive hand swabs were collected, 30.6 % of the conscripts reported of recent symptoms. In 2014, norovirus was rarely detected, but adenovirus was again frequently present, both on the surfaces and hands. Taken together, our results suggest that gastroenteritis outbreaks occurred in 2013, but not in 2014. Due to the low number of hand swabs positive for enteric viruses, no conclusions about associations between viral findings and gastroenteritis symptoms could be drawn. This study increased our understanding of the possible transmission of viruses via contaminated environment and hands.Entities:
Keywords: Adenovirus; Environmental contamination; Gastroenteritis; Norovirus; Questionnaire; Surface swab
Mesh:
Year: 2016 PMID: 27696180 PMCID: PMC5309312 DOI: 10.1007/s12560-016-9262-4
Source DB: PubMed Journal: Food Environ Virol ISSN: 1867-0334 Impact factor: 2.778
A summary of the different samples collected in garrisons A and B during the study period
| Sample category | Year | ||
|---|---|---|---|
| 2013 | 2014 | ||
| Garrison A | Garrison B | Garrison B | |
| Surface swabs | |||
| No. of swabs per sampled building | |||
| Health center | 22 | 22 | 6 |
| Barracks | 110 | 107 | 208 |
| Cafe | 0 | 6 | 0 |
| Total | 132 | 135 | 214 |
| Sampling period (no. of visits) | Mar.12–May 14 (6) | Apr.10–May 22 (6) | Jan.3–Feb.2 (11) |
| Hand swabs | |||
| No. of hand swabs | 28 | 49 | 32 |
| Sampling period (no. of visits) | Apr.16–Apr.23 (2) | Apr.17–May 8 (3) | Jan.29–Feb.2 (2) |
| Fecal samples | |||
| No. of fecal samples | 11 | 0 | 3 |
| Sampling perioda | Mar.5–May 14 | – | Jan.30–Feb.4 |
aThe 11 fecal samples collected in 2013 were available for viral analysis only after the surface and hand swabbing period was finished in May 2013
Fig. 1Distribution of norovirus (NoV) and adenovirus (AdV) findings over different surface swabbing sites in garrison A in 2013. All NoV findings represented genogroup I (NoV GI)
Fig. 2Distribution of norovirus (NoV) and adenovirus (AdV) findings over different surface swabbing sites in garrison B in 2013. All NoV findings represented genogroup II (NoV GII)
Viral findings on the surface and hand swabs collected in garrison A during the study period
| Sampling date | Garrison A | |||
|---|---|---|---|---|
| Surface swabs (%) | Hand swabs (%) | |||
| Norovirusa | Adenovirusb | Norovirus | Adenovirus | |
| Year 2013 | ||||
| Mar.12 | 8/30 (26.7) | 3/30 (10.0) | – | – |
| Apr.9 | 2/20 (10.0) | 0/20 (0.0) | – | – |
| Apr.16 | 1/21 (4.8) | 4/21 (19.0) | 0/16 (0.0) | 7/16 (43.8) |
| Apr.23 | 0/18 (0.0) | 1/18 (5.6) | 0/12 (0.0) | 7/12 (58.3)c |
| May 7 | 1/21 (4.8) | 0/21 (0.0) | – | – |
| May 14 | 0/22 (0.0) | 0/22 (0.0) | – | – |
| Total | 12/132 (9.1) | 8/132 (6.1) | 0/28 (0.0) | 14/28 (50.0) |
aAll detected noroviruses on the surfaces of this garrison belonged to genogroup I; of these norovirus-positive samples, three were confirmed as genotype GI.6 by sequencing
bNone of the adenoviruses detected on the surfaces were confirmed as adenovirus type 40/41
cTwo adenovirus strains detected on the hand swabs represented adenovirus type 40/41
Viral findings on the surface and hand swabs in garrison B during the study period
| Sampling date | Garrison B | |||
|---|---|---|---|---|
| Surface swabs (%) | Hand swabs (%) | |||
| Norovirusa | Adenovirusb | Norovirusa | Adenovirusb | |
| Year 2013 | ||||
| Apr. 10 | 6/24 (25.0) | 3/24 (12.5) | – | – |
| Apr.17 | 5/25 (20.0) | 2/25 (8.0) | 1/27 (3.7) | 8/27 (29.6) |
| Apr.24 | 0/21 (0.0) | 7/21 (33.3) | 0/13 (0.0) | 7/13 (53.8) |
| May 8 | 0/21 (0.0) | 1/21 (4.8) | 1/9 (11.1) | 4/9 (44.4) |
| May 15 | 1/22 (4.5) | 0/22 (0.0) | – | – |
| May 22 | 0/22 (0.0) | 4/22 (18.2) | – | – |
| Total | 12/135 (8.9) | 17/135 (12.6) | 2/49 (4.1) | 19/49 (38.8) |
| Year 2014 | ||||
| Jan.3 | 0/21 (0.0) | 2/21 (9.5) | – | – |
| Jan.9 | 1/21 (4.8) | 2/21 (9.5) | – | – |
| Jan.13 and Jan.16 | 0/44 (0.0) | 1/44 (2.3) | – | – |
| Jan.21 and Jan.23 | 0/44 (0.0) | 2/44 (4.5) | – | – |
| Jan.27, Jan.29, and Feb.2 | 0/64 (0.0) | 2/64 (3.1) | 0/32 (0.0) | 6/32 (18.8) |
| Feb.5 and Feb.7 | 0/20 (0.0) | 2/20 (10.0) | – | – |
| Total | 1/214 (0.5) | 11/214 (5.1) | 0/32 (0.0) | 6/32 (18.8) |
aAll detected noroviruses on the surfaces and hands in this garrison belonged to genogroup II; of these norovirus-positive samples, five were confirmed as genotype GII.4 by sequencing
bNone of the detected adenoviruses were confirmed as adenovirus type 40/41
Genotypes of the sequenced samples
| Garrison | Sampling date (Year 2013) | Sample code | Sample type | Genotype | Genbank accession no. | |||
|---|---|---|---|---|---|---|---|---|
| ORF1a | ORF1/2b | ORF2c | ORF1 | ORF1/2 | ||||
| A | Mar.5 | F1 | Fecal | GII.P4-New Orleans-2009 | GII.4-Sydney-2012 | KT943510 | Identical to KT943512 | |
| Mar.6 | F2 | Fecal | GI.Pb | GI.6 | GI.6 | Identical to KT943508 | KT943509 | |
| Mar.6 | F3 | Fecal | GI.Pb | GI.6 | NA | Identical to KT943508 | Identical to KT943509 | |
| Mar.7 | F4 | Fecal | NA | GII.7 | NA | NA | KT943513 | |
| Mar.8 | F5 | Fecal | GI.Pb | GI.6 | NA | Identical to KT943508 | Identical to KT943509 | |
| Mar.12 | S1 | Surface swab | GI.Pb | GI.6 | GI.6 | KT943508 | Identical to KT943509 | |
| Mar.12 | S2 | Surface swab | NA | NA | GI.6 | NA | NA | |
| Apr.9 | S3d | Surface swab | NA | GI.6 | GI.6 | NA | Identical to KT943509 | |
| B | Apr.10 | S4 | Surface swab | NA | GII.4-Sydney-2012 | NA | NA | KT943511 |
| Apr.10 | S5 | Surface swab | NA | GII.4-Sydney-2012 | NA | NA | KT943512 | |
| Apr.17 | S6 | Surface swab | NA | GII.4-Sydney-2012 | NA | NA | Identical to KT943511 | |
| Apr.17 | S7 | Surface swab | NA | GII.4-Sydney-2012 | NA | NA | identical to KT943511 | |
| Apr.17 | H1d | Hand swab | NA | GII.4-Sydney-2012 | NA | NA | Identical to KT943512 | |
aGenotype and variant, if available, according to the ORF1 sequence obtained with primers RegA and MJV12
bGenotype and variant, if available, according to the ORF1/2 junction sequence obtained either with primers JJVMF/G1SKR (samples F2, F3, F5, S1, S3) or QNIF2D/G2SKR (samples F1, F4, S4 – S7, H1)
cGenotype according to the ORF2 sequence obtained with primers GI.6RR/FF. These sequences were not submitted to the GenBank database
dThe ORF1/2 junction sequences of the samples S3 and H1 were 198 bp and 127 bp, respectively
Conscripts’ reports of their recent acute gastroenteritis (AGE) symptoms (diarrhea and either abdominal pain, vomiting, or both) and contacts with other conscripts or non-military persons suffering from AGE. Gar = garrison
| Category | Year |
| ||||||
|---|---|---|---|---|---|---|---|---|
| 2013 | 2014 | |||||||
| Gar A | 95 % CI | Gar B | 95 % CI | Gar B | 95 % CI | 1 | 2 | |
| Conscripts who had AGE symptoms within 6 days before hand swabbing (no./total; %) | 0/28 (0.0) | 0.0–14.3 | 15/49 (30.6) | 19.4–44.6 | 3/32 (9.4) | 2.5–25.0 | <0.001* | 0.025* |
| Conscripts who had been in contact with another conscript who had AGE symptoms within 6 days before hand swabbing (no./total; %) | 8/28 (28.6) | 15.1–47.2 | 31/49 (63.3) | 49.2–75.4 | 15/32 (46.9) | 30.9–63.6 | 0.004* | 0.156 |
| Conscripts who had been in contact with non-military persons who had AGE symptoms within 6 days before hand swabbing (no./total; %) | 3/28 (10.7) | 2.9–28.0 | 20/49 (40.8) | 28.2–54.8 | 9/32 (28.1) | 15.4–45.5 | 0.005* | 0.257 |
a P values were calculated with mid-P exact test. P value 1 is calculated between the questionnaire results collected in garrisons A and B in 2013. P value 2 is calculated between the questionnaire results collected in garrison B in 2013 and 2014
* P values < 0.05 were considered statistically significant