Literature DB >> 27693499

Integrating in silico models to enhance predictivity for developmental toxicity.

Marco Marzo1, Sunil Kulkarni2, Alberto Manganaro3, Alessandra Roncaglioni3, Shengde Wu4, Tara S Barton-Maclaren2, Cathy Lester4, Emilio Benfenati3.   

Abstract

Application of in silico models to predict developmental toxicity has demonstrated limited success particularly when employed as a single source of information. It is acknowledged that modelling the complex outcomes related to this endpoint is a challenge; however, such models have been developed and reported in the literature. The current study explored the possibility of integrating the selected public domain models (CAESAR, SARpy and P&G model) with the selected commercial modelling suites (Multicase, Leadscope and Derek Nexus) to assess if there is an increase in overall predictive performance. The results varied according to the data sets used to assess performance which improved upon model integration relative to individual models. Moreover, because different models are based on different specific developmental toxicity effects, integration of these models increased the applicable chemical and biological spaces. It is suggested that this approach reduces uncertainty associated with in silico predictions by achieving a consensus among a battery of models. The use of tools to assess the applicability domain also improves the interpretation of the predictions. This has been verified in the case of the software VEGA, which makes freely available QSAR models with a measurement of the applicability domain.
Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Entities:  

Keywords:  Developmental toxicity; In silico; In vitro and alternatives; QSAR; VEGA

Mesh:

Year:  2016        PMID: 27693499     DOI: 10.1016/j.tox.2016.09.015

Source DB:  PubMed          Journal:  Toxicology        ISSN: 0300-483X            Impact factor:   4.221


  4 in total

1.  Optimization of the TeraTox Assay for Preclinical Teratogenicity Assessment.

Authors:  Manuela Jaklin; Jitao David Zhang; Nicole Schäfer; Nicole Clemann; Paul Barrow; Erich Küng; Lisa Sach-Peltason; Claudia McGinnis; Marcel Leist; Stefan Kustermann
Journal:  Toxicol Sci       Date:  2022-06-28       Impact factor: 4.109

2.  Prediction Model with High-Performance Constitutive Androstane Receptor (CAR) Using DeepSnap-Deep Learning Approach from the Tox21 10K Compound Library.

Authors:  Yasunari Matsuzaka; Yoshihiro Uesawa
Journal:  Int J Mol Sci       Date:  2019-09-30       Impact factor: 5.923

3.  Consensus versus Individual QSARs in Classification: Comparison on a Large-Scale Case Study.

Authors:  Cecile Valsecchi; Francesca Grisoni; Viviana Consonni; Davide Ballabio
Journal:  J Chem Inf Model       Date:  2020-03-02       Impact factor: 4.956

4.  Next Generation Reproductive and Developmental Toxicology: Crosstalk Into the Future.

Authors:  Karin Sørig Hougaard
Journal:  Front Toxicol       Date:  2021-03-18
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.